PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G171179_P01 | ||||||||
Common Name | EREB160, umc1588, ZEAMMB73_944278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 363aa MW: 39301.9 Da PI: 4.9691 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 111 | 160 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg+f ++eeAa+a++a +++++g GRMZM2G171179_P01 111 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFNSPEEAARAYDAEARRIRG 160 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.4E-35 | 111 | 174 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.1E-31 | 111 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.644 | 111 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-21 | 111 | 170 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.24E-30 | 111 | 169 | No hit | No description |
Pfam | PF00847 | 2.2E-11 | 112 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MCGGAILSDI IPPPPPRRVT AGHLWPESKK PRRAASGRRG APVEQHEQEE DFEADFEEFE 60 VESGESELES EDEPKPFAAP RSALARGGLN TGAAGVDGPA ANSVKRKRKN QFRGIRRRPW 120 GKWAAEIRDP RKGVRVWLGT FNSPEEAARA YDAEARRIRG KKAKVNFPDE VPTAVSQKRR 180 AAGPASLKAP KMDVEEEKPI IKLAVNNMTN SNAYHYPAVV GHNIIPEPFM QTQNMPFAPL 240 VNYAALVNLS SDQGSNSFGC SDFSLENDSR TPDITSVPAP VATLAAVGES VFVQNTAGHA 300 VASPATGNTG VDLAELEPYM NFLMDGGSDD SISTLLSCDG SQDVVSNMDL WSFEDMPMSA 360 GFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 111 | 171 | 14 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 118 | KRKRKNQFRGIRRRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.4792 | 0.0 | embryo| endosperm| glume| meristem| ovary| pericarp| root| shoot| silk| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G171179 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G171179_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054915 | 0.0 | BT054915.1 Zea mays full-length cDNA clone ZM_BFc0179G23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146231.1 | 0.0 | uncharacterized LOC100279803 | ||||
Refseq | XP_008658488.1 | 0.0 | uncharacterized protein LOC100279803 isoform X1 | ||||
Swissprot | Q6K7E6 | 1e-118 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | B8A023 | 0.0 | B8A023_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G171179_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 6e-42 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G171179_P01 |
Entrez Gene | 100279803 |