PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G170559_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 616aa    MW: 65352.9 Da    PI: 8.7033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G170559_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11390433452
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                        +h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ +Y++
  GRMZM2G170559_P01 390 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLDYMS 433
                        78999********************95.....599************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.472386435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16388460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-15389456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9390433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12392441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-5401440No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MDTLFVLGQE SRLRILQQAA ARVPGCAYLC AWAAAIPSQP HRPASSSSSA AAATTSARLL  60
CCIDAWLCDG GRPSLGDDAH RLRALFDAYR GSLCAPVSGC VPGWAYKDGR AYMELPAHDL  120
TTSASLPVQQ QFYQEAGIQM AAFMGCESGE VEIGMYTAPT SGTSPMSLES TLQQVFSEDF  180
FQQSLLEELL QLPPTRPSSP SVSVGSPAAD ALTSLPRTMA ATPTPSSSVE RRAPPVPPPP  240
PPHARPPVFP VPFARHGPGH VRFPSADTDD AAMAQAMIDV ISGASSSSAL PTPPSTATAP  300
PPPGKHHRAR RRRGAATAFR AYNAALAPRA PWRPPGVPGQ RMIKMGISIL RRMHMLRFSR  360
ERTGTTMAQR GQEGEDDLSS PAVPTSSQLN HMISERRRRE RLNESFEALR GLLPPGSKKD  420
KATVLAKTLD YMSILVAQIA DLEAKNRSLE SRAQHHHRHA NGGSNGGRVV VLQGLMSGTS  480
SSERVQVHVT AGAGDVGTSA SSPSAGPPPP ASREVEETVR VHARAARSDV AELVARALAA  540
IKGMGRFTVV AVDAGRSSDG GGDFAQATFT LRATSCKEHF TKPPDAALLD VEGVVWIDFA  600
HGNTNAPCAQ DTFSRD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394399ERRRRE
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G170559
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G170559_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7976152e-45FJ797615.1 Zea mays GS3-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357844.10.0putative transcription factor bHLH041
TrEMBLA0A1D6H6X00.0A0A1D6H6X0_MAIZE; Putative transcription factor bHLH041
STRINGGRMZM2G170559_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Representative plantOGRP1445644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-15bHLH family protein