PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G170322_P03
Common NameLOC100273616, ZEAMMB73_574361
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 464aa    MW: 49775.9 Da    PI: 10.5841
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G170322_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-084777132
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                       r rWT+eE+ ++++a +++G   W++I  t +
  GRMZM2G170322_P03 47 RERWTEEEHGRFLEALQLHGRA-WRRIQGTQP 77
                       78******************88.****87755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.39E-114170IPR009057Homeodomain-like
PROSITE profilePS512949.05142127IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-647118IPR009057Homeodomain-like
SuperFamilySSF466895.39E-1197126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MPCLEQIPMA TGETAVDRRE DPRDMDLSGE EHVRPKARKP YTITKRRERW TEEEHGRFLE  60
ALQLHGRAWR RIQGTQPRSR PSRSFFIRTR RRTHTLLLRA CVRAEHIGTK TAVQIRSHAQ  120
KFFTKVVRES SPGSNASAGA APAIQIPPPR PKRKPAHPYP RKADGAAKKP APELKRLEKT  180
SLRDRVRDEG SPTSVLASAR TALRAEVSGS VVANSSSASR SPALSDAGSN ERGDGGGSLA  240
SSVDREDGCA SPRTRAPCTK VLCDAHEVSR LGSGAPVVKL FGNKVVVVKV KDLETDTPPA  300
SVAEAARNGS PTNGAAGASS WKPWPELTCL VPRRDGFAAQ PIVSPPCAVF YYPQASAQEH  360
QQASEPLDHR RAQREGSSPT GSSVASSAAA ESRHGPGQEN ASDGYAALRA AIPRPTKRAS  420
SASFGGRGFV PYKRCAAESE AARPVALALA PGEEADGDLT RLCL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.316490.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G170322
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G170322_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0415050.0BT041505.1 Zea mays full-length cDNA clone ZM_BFc0009N12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141504.10.0uncharacterized LOC100273616
RefseqXP_020406957.10.0putative MYB DNA-binding domain superfamily protein isoform X1
TrEMBLB4FWL70.0B4FWL7_MAIZE; Uncharacterized protein
STRINGGRMZM2G170322_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Representative plantOGRP12551549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.17e-27MYB_related family protein