PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G170322_P02 | ||||||||
Common Name | LOC100273616, MYBR58, ZEAMMB73_574361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 433aa MW: 46096.6 Da PI: 9.9617 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.2e-16 | 47 | 91 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a +++G W++I +++g ++t+ q++s+ qk+ GRMZM2G170322_P02 47 RERWTEEEHGRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 91 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-15 | 41 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.477 | 42 | 96 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.0E-15 | 45 | 94 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.7E-11 | 46 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-9 | 47 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-13 | 47 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.00E-9 | 49 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001007 | developmental stage | pollen development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MPCLEQIPMA TGETAVDRRE DPRDMDLSGE EHVRPKARKP YTITKRRERW TEEEHGRFLE 60 ALQLHGRAWR RIQEHIGTKT AVQIRSHAQK FFTKVVRESS PGSNASAGAA PAIQIPPPRP 120 KRKPAHPYPR KADGAAKKPA PELKRLEKTS LRDRVRDEGS PTSVLASART ALRAEVSGSV 180 VANSSSASRS PALSDAGSNE RGDGGGSLAS SVDREDGCAS PRTRAPCTKV LCDAHEVSRL 240 GSGAPVVKLF GNKVVVVKVK DLETDTPPAS VAEAARNGSP TNGAAGASSW KPWPELTCLV 300 PRRDGFAAQP IVSPPCAVFY YPQASAQEHQ QASEPLDHRR AQREGSSPTG SSVASSAAAE 360 SRHGPGQENA SDGYAALRAA IPRPTKRASS ASFGGRGFVP YKRCAAESEA ARPVALALAP 420 GEEADGDLTR LCL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.31649 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G170322 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G170322_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039162 | 0.0 | BT039162.1 Zea mays full-length cDNA clone ZM_BFb0379A11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008676826.1 | 0.0 | putative MYB DNA-binding domain superfamily protein isoform X2 | ||||
TrEMBL | B4FPX4 | 0.0 | B4FPX4_MAIZE; MYB-related transcription factor | ||||
STRING | GRMZM2G170322_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 1e-32 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G170322_P02 |
Entrez Gene | 100273616 |