PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G170232_P01 | ||||||||
Common Name | ZEAMMB73_929075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 131aa MW: 14375.6 Da PI: 9.1085 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 58.9 | 2.1e-18 | 1 | 71 | 22 | 73 |
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec 73 +Rls+ +a++f +Lqd+LGfdk+skt+ WLl q+kp i+ l++ + s++s c GRMZM2G170232_P01 1 MRLSVGVAREFLALQDRLGFDKASKTLKWLLAQSKPPIDCLVDAadqvavvtggrptlvkgreqG-SNSSIC 71 8*****************************************99666666655555555555422.222233 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.3E-16 | 1 | 89 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 21.427 | 1 | 41 | IPR017887 | Transcription factor TCP subgroup |
SMART | SM00271 | 2.8E-5 | 89 | 128 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 10.955 | 90 | 131 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 1.2E-12 | 91 | 126 | IPR001623 | DnaJ domain |
CDD | cd06257 | 4.33E-15 | 91 | 126 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 3.01E-14 | 91 | 127 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 1.4E-14 | 91 | 126 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.3E-10 | 92 | 110 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.3E-10 | 110 | 125 | IPR001623 | DnaJ domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MRLSVGVARE FLALQDRLGF DKASKTLKWL LAQSKPPIDC LVDAADQVAV VTGGRPTLVK 60 GREQGSNSSI CCLTDSRWDK SLNCSKCVTY CFQILGVGKT TSQQEIKKAY HKLALRLHPD 120 KNPGDEVVSQ P |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.39804 | 4e-99 | tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G170232 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G170232_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961498 | 9e-97 | EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds. | |||
GenBank | KJ727762 | 9e-97 | KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001148951.2 | 3e-38 | teosinte branched1 protein | ||||
TrEMBL | A0A1D6PWT6 | 1e-47 | A0A1D6PWT6_MAIZE; Chaperone protein dnaJ 6 | ||||
STRING | GRMZM2G170232_P01 | 1e-92 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.1 | 9e-13 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G170232_P01 |