PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G170148_P01
Common NameLOC100282994, MYBR86, ZEAMMB73_764397
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 310aa    MW: 33626.3 Da    PI: 9.0535
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G170148_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.9e-1379123147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  GRMZM2G170148_P01  79 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 123
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.99E-1673129IPR009057Homeodomain-like
PROSITE profilePS5129414.62874128IPR017930Myb domain
TIGRFAMsTIGR015571.1E-1877126IPR006447Myb domain, plants
SMARTSM007172.7E-1078126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-678119IPR009057Homeodomain-like
PfamPF002491.1E-1079123IPR001005SANT/Myb domain
CDDcd001671.10E-781124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVSMNTTPNP LDSAAGSAAV AGGSVDEGGG GGGRKKRMRG AVAAAMVPPP MAVPLPAAAP  60
AAGEEVRKVR KPYTITKSRE SWTEPEHDKF LEALQLFDRD WKKIEAYVGS KTVIQIRSHA  120
QKYFLKVQKN GTGEHLPPPR PKRKAAHPYP QKSSKNVSQT ILLQEQPTQR EQGSVMPMDT  180
ATVINTNANV AVAVAVPSWD NTLAQSLSAG LVPGATNNCS SSIESPSGTW PTSEAVEQEI  240
VVPSLHAMPD FARVYSFLGS IFDPDTSGHL QRLKVMDPID IQTVLLLMRN LSTNLRSPDF  300
EQHLWWWGPC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1192420.0endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G170148
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G170148_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406000.0BT040600.1 Zea mays full-length cDNA clone ZM_BFc0103D11 mRNA, complete cds.
GenBankEU9630640.0EU963064.1 Zea mays clone 257070 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305021.11e-162protein REVEILLE 6 isoform X2
SwissprotQ8H0W31e-88RVE6_ARATH; Protein REVEILLE 6
TrEMBLB4FU120.0B4FU12_MAIZE; DNA binding protein
STRINGGRMZM2G170148_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.23e-74MYB_related family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]