PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G170049_P01 | ||||||||
Common Name | gpm41 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 31589 Da PI: 5.7192 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G g+W++ +++ g+ R +k+c++rw +yl GRMZM2G170049_P01 15 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3e-17 | 69 | 113 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g +++eE+e +++ lG++ W++Iar+++ gRt++++k++w++yl GRMZM2G170049_P01 69 GMFSPEEEETVMSLHATLGNK-WSRIARHLP-GRTDNEVKNYWNSYL 113 569******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.21 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.99E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.029 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-16 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-26 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.55E-12 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGCKACDKPK PNYRKGLWSP EEDQKLRDYI LLHGHGCWSA LPAKAGLQRN GKSCRLRWIN 60 YLRPGLKHGM FSPEEEETVM SLHATLGNKW SRIARHLPGR TDNEVKNYWN SYLKKRVEGK 120 DQGPSTPAPA ASNSDDDSHC VKQRRDDDGT ADSGASEPRE SSSADDSSCL TDPHACRPHA 180 PVPPKVMFAD WLDMDYVGGA LPATAPAAPG LLGAAGVATA STGDRDQHQV MSMSQGSVQV 240 DGPSGADVSL HGFDDSGAGC WEFQEHFDAI DHMQAAGFCD LLSMSDYFGL D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-25 | 11 | 118 | 3 | 109 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.14524 | 0.0 | endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G170049 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G170049_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038744 | 0.0 | BT038744.1 Zea mays full-length cDNA clone ZM_BFb0323B03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140400.1 | 0.0 | uncharacterized LOC100272454 | ||||
TrEMBL | B4FNQ6 | 0.0 | B4FNQ6_MAIZE; MYB transcription factor | ||||
STRING | GRMZM2G170049_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 2e-58 | myb domain protein 18 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G170049_P01 |
Entrez Gene | 100272454 |