PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G169966_P01
Common NameLOC100281430, WRKY57
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 380aa    MW: 41494.5 Da    PI: 7.0321
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G169966_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.6e-3251108260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        dDgynWrKYGqK++kgse+prsYY+C+++gCp+kkkve+s  d++v+ei+Y+g+Hnh+k
  GRMZM2G169966_P01  51 DDGYNWRKYGQKQMKGSENPRSYYKCSFPGCPTKKKVEQSP-DGQVTEIVYKGTHNHPK 108
                        8****************************************.***************85 PP
2WRKY993e-31228286159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct agC v+k+ver+ +d+ +v++tYeg+Hnh+
  GRMZM2G169966_P01 228 LDDGYRWRKYGQKVVKGNPNPRSYYKCTGAGCLVRKHVERACHDTCAVVTTYEGKHNHD 286
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-2942109IPR003657WRKY domain
PROSITE profilePS5081123.50245109IPR003657WRKY domain
SuperFamilySSF1182906.41E-2547109IPR003657WRKY domain
SMARTSM007742.4E-3550108IPR003657WRKY domain
PfamPF031061.2E-2551107IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-34213288IPR003657WRKY domain
SuperFamilySSF1182902.88E-28220288IPR003657WRKY domain
PROSITE profilePS5081137.011223288IPR003657WRKY domain
SMARTSM007742.8E-35228287IPR003657WRKY domain
PfamPF031063.3E-23229286IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MLQQQPWTYQ EPTAQFEAPA AQAGNMFGTG GGYGAAPGFR EQRQSHRPSS DDGYNWRKYG  60
QKQMKGSENP RSYYKCSFPG CPTKKKVEQS PDGQVTEIVY KGTHNHPKPQ STRRGASSAP  120
ASYVVQSASD AVMPEHSWGA LSGTPVVTPE NSSGSFGGDG DEVNGMSSRL GGSFGADDLD  180
DDEPDSKRWR KDGGDADAAG CSVSVASNNR TVREPRVVVQ TMSDIDVLDD GYRWRKYGQK  240
VVKGNPNPRS YYKCTGAGCL VRKHVERACH DTCAVVTTYE GKHNHDVPPA RGSASLYRAA  300
LAAQMPPQQA ASYQGAPMPA AERGSFALSG FGDPVGTAYS YYTNHHQEQE QQQQQPNQAM  360
RYAKDEPQDC MSFFEQQLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-3451288877Probable WRKY transcription factor 4
2lex_A8e-3451288877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.823730.0glume
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G169966
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G169966_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0549490.0BT054949.2 Zea mays full-length cDNA clone ZM_BFc0099F08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354940.10.0uncharacterized protein LOC100281430
SwissprotQ6B6R41e-122WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1D6M6E80.0A0A1D6M6E8_MAIZE; Putative WRKY DNA-binding domain superfamily protein
TrEMBLK7UPF20.0K7UPF2_MAIZE; WRKY transcription factor (Fragment)
STRINGGRMZM2G169966_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-89WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]