PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G169947_P01 | ||||||||
Common Name | bHLH83 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 204aa MW: 21858.5 Da PI: 10.2174 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.7 | 6.6e-11 | 27 | 76 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 +e+ErrRR++++s ++L +l+Pk +s K ++ L +A YIk L GRMZM2G169947_P01 27 RKEIERRRRQQMKSLCAKLASLIPKeH---YSSKdaMTQLGSLDEAATYIKRL 76 579**********************55...444446***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.823 | 22 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-12 | 27 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-10 | 27 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-8 | 28 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-8 | 28 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEMRAKKSSR SSTSNTSGST TTTAVERKEI ERRRRQQMKS LCAKLASLIP KEHYSSKDAM 60 TQLGSLDEAA TYIKRLKERV EELRHKSASA RLLAAGSGTR RGGGGGGAST SSAATTTASG 120 GAGSSEEAGR REDDMPPAVV EVRQHNDGSS LDVVLISSAA RPFKLHEVVT VLEEEGAETV 180 NANLSVAGTK IFYTIHCKVR TYVR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G169947 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G169947_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727751 | 0.0 | KJ727751.1 Zea mays clone pUT5692 bHLH transcription factor (bHLH83) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008673815.1 | 1e-140 | transcription factor bHLH162 | ||||
TrEMBL | A0A060D172 | 1e-144 | A0A060D172_MAIZE; BHLH transcription factor (Fragment) | ||||
STRING | GRMZM2G169947_P01 | 1e-145 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 | Representative plant | OGRP1345 | 11 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-13 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G169947_P01 |