PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G169636_P01
Common NameLOC103634387
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 545aa    MW: 57959.5 Da    PI: 7.0312
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G169636_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS190.98.2e-591495322374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalkl..fs 85 
                        ++lL  cA a+++g+l ++q+lL  l elas +gdp++Rlaa+ ++AL +rl + +++   +++++ + +  +     ++ +l+  +l  f+
  GRMZM2G169636_P01 149 EQLLNPCAAAIEAGNLPRTQHLLYVLGELASFSGDPNHRLAAHGLRALTRRLPHaTGQAALATVKVPPCECPTsvfsgVDPRLFRASLirFN 240
                        689*************************************************99555555555533333322223655444444444489** PP

               GRAS  86 evsPilkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetge 163
                        evsP++ + + +aN+aI +a++++       ++vH++D+++s+G+QWp+Ll+aL+  p  + pps+R+T vg+ ++       +        
  GRMZM2G169636_P01 241 EVSPWFAVPNALANSAIAQAASRKkgavaepRQVHVVDIGVSHGVQWPTLLEALTRVPrgSTPPSVRLTLVGPTATPpvpfsASPPGYDCSP 332
                        ********************99888888888899*********************76644889*********9776689998889999**** PP

               GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFl 254
                        +L ++A+++++++ +    a  l++l   +  + pgE+l+V+l+++l  +       ++ + ++ + v++l+P+++v++e +  + n+ s  
  GRMZM2G169636_P01 333 QLLRYAKSIDLDLAIVH--APCLDTL---RGTLTPGETLVVCLQFRLGLTT------ADDQAAIFRKVRDLNPELMVLTELDGGRrNDDSAT 413
                        **********9998864..5555555...44679***********887776......33346899*****************9888****** PP

               GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                         +f+  le  + ++ds++a +    + +  +Er++++ e+  ++a   +         e Wr+rl +aGF++++++ +a+++ak+llrk++ 
  GRMZM2G169636_P01 414 SEFAARLELLWRFLDSTAAAF----KGMDAYERRVMEAEAGTALALTPRCGATVDGGREAWRARLAAAGFEEAAFGGEAVETAKALLRKYD- 500
                        *****************8886....777778888888888888888888888889999*********************************. PP

               GRAS 347 dgyrve...eesgslv.lgWkdrpLvsvSaWr 374
                         g+++     + +++v l W+++p+ + S+Wr
  GRMZM2G169636_P01 501 GGWELVppsPSAAAAVgLRWEGQPVSFSSMWR 532
                        66777755433455557**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.813122509IPR005202Transcription factor GRAS
PfamPF035142.8E-56149532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MNNERESQEP AAATTSDWLD ESIAFLAANL DLGFNDYGWP SASEAQERHD DVRSMIVETL  60
APTATTLHQP SLNLDISVAS SSSPMTSQQE FGQPKKRKSS GNSSSQRPHV GGGGQQEKGG  120
ASCARPKPGK KGSGKGAAAT VDREARWAEQ LLNPCAAAIE AGNLPRTQHL LYVLGELASF  180
SGDPNHRLAA HGLRALTRRL PHATGQAALA TVKVPPCECP TSVFSGVDPR LFRASLIRFN  240
EVSPWFAVPN ALANSAIAQA ASRKKGAVAE PRQVHVVDIG VSHGVQWPTL LEALTRVPRG  300
STPPSVRLTL VGPTATPPVP FSASPPGYDC SPQLLRYAKS IDLDLAIVHA PCLDTLRGTL  360
TPGETLVVCL QFRLGLTTAD DQAAIFRKVR DLNPELMVLT ELDGGRRNDD SATSEFAARL  420
ELLWRFLDST AAAFKGMDAY ERRVMEAEAG TALALTPRCG ATVDGGREAW RARLAAAGFE  480
EAAFGGEAVE TAKALLRKYD GGWELVPPSP SAAAAVGLRW EGQPVSFSSM WRPAQASPVL  540
IGPCT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-2614553330420Protein SHORT-ROOT
5b3h_E2e-2614553330420Protein SHORT-ROOT
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G169636
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G169636_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008654143.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A1D6IJF00.0A0A1D6IJF0_MAIZE; Scarecrow-like protein 29
STRINGGRMZM2G169636_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Representative plantOGRP40821525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.14e-84GRAS family protein