PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G169382_P01 | ||||||||
Common Name | LOC100193143 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 24490.4 Da PI: 7.3445 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.2e-19 | 57 | 107 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+W+AeIrdp+ + r++lg++ tae Aa+a+++a+++++g+ GRMZM2G169382_P01 57 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 107 6********.**********75....44*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.04E-22 | 57 | 115 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.6E-38 | 57 | 120 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-32 | 57 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.487 | 57 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.42E-16 | 57 | 116 | No hit | No description |
PRINTS | PR00367 | 4.5E-11 | 58 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-12 | 58 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-11 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MCGGAIIFDY IPARRRVSAA DFWPDSEADA EDSDSHAPDP ERVPRPRGKA KRGRKNQYRG 60 IRQRPWGKWA AEIRDPVKGV RVWLGTYPTA EAAARAYDRA ARRIRGAKAK VNFPNDASSS 120 SVTAPTAASG VAAQAPAVFL PAPKVEARAQ VSDEVKELSE ELMAYENYMN FLGVPYMEGG 180 NAAVSATTAA AAAAAVPEEA QVPAPAPAGL WSFEDYYYPP SLSLFTE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 57 | 120 | 5 | 69 | ATERF1 |
3gcc_A | 3e-22 | 57 | 120 | 5 | 69 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.81298 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G169382 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G169382_P01 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035327 | 0.0 | BT035327.1 Zea mays full-length cDNA clone ZM_BFb0055H11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131773.1 | 1e-162 | uncharacterized protein LOC100193143 | ||||
TrEMBL | B4FDY9 | 1e-160 | B4FDY9_MAIZE; Ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | K4JRM4 | 1e-160 | K4JRM4_MAIZE; AP2-EREBP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G169382_P01 | 1e-161 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11547 | 25 | 40 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 5e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G169382_P01 |
Entrez Gene | 100193143 |