PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G169316_P01
Common NameLOC100273738, ZEAMMB73_398609
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 401aa    MW: 43374.4 Da    PI: 5.4113
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G169316_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.2e-1897142147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+W++eEd  l ++v+++G ++W++Iar ++ gR++k+c++rw + 
  GRMZM2G169316_P01  97 RGPWSPEEDAVLSNLVEKFGARNWTLIARGIP-GRSGKSCRLRWCNQ 142
                        89******************************.***********985 PP
2Myb_DNA-binding52.61e-16149193147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r+++T+eEd ++  a++ +G++ W++Ia+ +  gRt++ +k++w++ 
  GRMZM2G169316_P01 149 RKPFTEEEDRIIMAAHAVHGNK-WASIAKLLD-GRTDNAIKNHWNST 193
                        789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.4392147IPR017930Myb domain
SuperFamilySSF466897.91E-3195190IPR009057Homeodomain-like
SMARTSM007174.3E-1596145IPR001005SANT/Myb domain
PfamPF002496.8E-1797142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2698150IPR009057Homeodomain-like
CDDcd001671.37E-1499141No hitNo description
PROSITE profilePS5129422.688148198IPR017930Myb domain
SMARTSM007172.8E-15148196IPR001005SANT/Myb domain
PfamPF002491.5E-14149193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-24151197IPR009057Homeodomain-like
CDDcd001671.24E-11151194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSAAETAVSP TTTPQPQLQS DPNAAADAAS SNSLWVADET QTLTEVLLQP QPNHLSPPPS  60
GEGDDGITAS GAPVGGDAAA SASAAAAANA TIEERVRGPW SPEEDAVLSN LVEKFGARNW  120
TLIARGIPGR SGKSCRLRWC NQLDPQVKRK PFTEEEDRII MAAHAVHGNK WASIAKLLDG  180
RTDNAIKNHW NSTLRRRYCN DGQCKHGGSV ERSIPKVSRE VSEEPWPLND LNSFTAMDVK  240
DDPVQTAPDT SPRARHITDH CSITQVVDPP YLSRPAAKIG AFRPYYLGHT EPTQQEMPGA  300
VVMFDSTHKV STPESEVFKF VDPICFAAEV PDKCGYGCCG AHEQHRKNSL LGPEFSEFEG  360
HPPVLNISFA SLVSEISSIA WMRSGMQSSD SSNLMQSIPP T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-41921972107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.938710.0root| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G169316
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G169316_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417270.0BT041727.2 Zea mays full-length cDNA clone ZM_BFb0040C04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141619.20.0MYB transcription factor
TrEMBLB4FX890.0B4FX89_MAIZE; MYB transcription factor
STRINGGRMZM2G169316_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-79myb domain protein 109