PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G169270_P02
Common NameLOC103642178, Zm.81307
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 1106aa    MW: 121172 Da    PI: 7.3221
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G169270_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.5e-40164241178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqv++C+adl++ak+yhrrhkvCe+hsk+++++v ++ qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+
  GRMZM2G169270_P02 164 MCQVDDCRADLTSAKDYHRRHKVCETHSKTTKAVVGNQAQRFCQQCSRFHPLAEFDEGKRSCRRRLAGHNRRRRKSQP 241
                        6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.2E-34158226IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.889162239IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-37163242IPR004333Transcription factor, SBP-box
PfamPF031105.1E-30165238IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MQREVGPQVA PPLFLHQIQP MPPHAAAAAK KRGHPWPAAG AAEAGAGNWN PRLWDWDSRA  60
LTARPSSDAL RLAGGQPQPA AEAQRQGAGA LNLQLGLQED STTPMDASPT APAAAAAASP  120
PASAAAGQEP VVRPSKRVRS GSPGGAGGGP GGGGTANGGA SYPMCQVDDC RADLTSAKDY  180
HRRHKVCETH SKTTKAVVGN QAQRFCQQCS RFHPLAEFDE GKRSCRRRLA GHNRRRRKSQ  240
PTDVASQLLL PVNQENAANR TQDIVNLITV IARLQGSNVG KVPSIPPIPD KQNLVEIISK  300
INSLNNATSP AKSPSPEVVV LNTSQEQREQ GHDSVDKTTN GIDKQTVPST MDLLGVFSTG  360
FATSTPVTNT SQSQGSSDSS GNNKSKSHST EPATVVNSHD ISTQDFPAAG FMRSNSTQES  420
RPHIYKQTEH ETRPYLSLQL FGSSEEDIPP KMDSLNKYLS SESSNPLDER SPSSSPPITR  480
KFFPIHSVDE EVRHPHITDF GEDATMGEVS TSQAWCAPPL DLFKDLERPL ENGSPPNPGY  540
QSCYVSTSCS DHSPSTSNSD GQDRTGRIIF KLFGKEPSTI PGNLRDDIVN WLKHSPTEME  600
GYIRPGCLVL SMYLSMPAIA WDELEENLLQ RVNSLVQSSD LDFWRKGRFL VRTGSKLVSY  660
KAGMTRLSKS WRTWNTPELT FVSPIAVVGG QKISLILKGR NLSIPGTQIH CTSTGKYISK  720
EVLCSAYPGT IYDDSGVETF DLPGQPDFIL GRCFIEVENR FRGNSFPVIV ASSSVCQELR  780
SLEVELEDSQ VLDVSSDGQI HDCRQSKTRV QVLHFLNELG WLFQRASACT LSTRPDVSDL  840
DLTQFSITRF KYLLLFSSER DWCSLTKTLL DILAKRSLVS EELSKETMEM LAEIHLLNRA  900
VKRKSRRMVH LLVQFVVLCL DNSKVYPFLP NFPGPGGLTP LHLAASIENA EDIVDALTDD  960
PQQVGLTCWQ SALDEDGQSP ETYAKLRNHN SYNELVAQKL VDMKNSQVTI TVNGDEIHMD  1020
QLGNVDDRKK SGVQALQIRS CSQCAILESG VLRQPMRSRG LLARPYIHSM LAIAAVCVCV  1080
CVFMRALLRI NSGKSFKWER LDYGTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-32156238284squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G169270
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G169270_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001337218.10.0SBP-transcription factor16
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A096SVS60.0A0A096SVS6_MAIZE; SBP-transcription factor16
STRINGGRMZM2G169270_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14