PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G169270_P01
Common NameLOC103642178, Zm.81307
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 1106aa    MW: 121172 Da    PI: 7.3221
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G169270_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.5e-40164241178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqv++C+adl++ak+yhrrhkvCe+hsk+++++v ++ qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+
  GRMZM2G169270_P01 164 MCQVDDCRADLTSAKDYHRRHKVCETHSKTTKAVVGNQAQRFCQQCSRFHPLAEFDEGKRSCRRRLAGHNRRRRKSQP 241
                        6**************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.2E-34158226IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.889162239IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-37163242IPR004333Transcription factor, SBP-box
PfamPF031105.1E-30165238IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MQREVGPQVA PPLFLHQIQP MPPHAAAAAK KRGHPWPAAG AAEAGAGNWN PRLWDWDSRA  60
LTARPSSDAL RLAGGQPQPA AEAQRQGAGA LNLQLGLQED STTPMDASPT APAAAAAASP  120
PASAAAGQEP VVRPSKRVRS GSPGGAGGGP GGGGTANGGA SYPMCQVDDC RADLTSAKDY  180
HRRHKVCETH SKTTKAVVGN QAQRFCQQCS RFHPLAEFDE GKRSCRRRLA GHNRRRRKSQ  240
PTDVASQLLL PVNQENAANR TQDIVNLITV IARLQGSNVG KVPSIPPIPD KQNLVEIISK  300
INSLNNATSP AKSPSPEVVV LNTSQEQREQ GHDSVDKTTN GIDKQTVPST MDLLGVFSTG  360
FATSTPVTNT SQSQGSSDSS GNNKSKSHST EPATVVNSHD ISTQDFPAAG FMRSNSTQES  420
RPHIYKQTEH ETRPYLSLQL FGSSEEDIPP KMDSLNKYLS SESSNPLDER SPSSSPPITR  480
KFFPIHSVDE EVRHPHITDF GEDATMGEVS TSQAWCAPPL DLFKDLERPL ENGSPPNPGY  540
QSCYVSTSCS DHSPSTSNSD GQDRTGRIIF KLFGKEPSTI PGNLRDDIVN WLKHSPTEME  600
GYIRPGCLVL SMYLSMPAIA WDELEENLLQ RVNSLVQSSD LDFWRKGRFL VRTGSKLVSY  660
KAGMTRLSKS WRTWNTPELT FVSPIAVVGG QKISLILKGR NLSIPGTQIH CTSTGKYISK  720
EVLCSAYPGT IYDDSGVETF DLPGQPDFIL GRCFIEVENR FRGNSFPVIV ASSSVCQELR  780
SLEVELEDSQ VLDVSSDGQI HDCRQSKTRV QVLHFLNELG WLFQRASACT LSTRPDVSDL  840
DLTQFSITRF KYLLLFSSER DWCSLTKTLL DILAKRSLVS EELSKETMEM LAEIHLLNRA  900
VKRKSRRMVH LLVQFVVLCL DNSKVYPFLP NFPGPGGLTP LHLAASIENA EDIVDALTDD  960
PQQVGLTCWQ SALDEDGQSP ETYAKLRNHN SYNELVAQKL VDMKNSQVTI TVNGDEIHMD  1020
QLGNVDDRKK SGVQALQIRS CSQCAILESG VLRQPMRSRG LLARPYIHSM LAIAAVCVCV  1080
CVFMRALLRI NSGKSFKWER LDYGTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-32156238284squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G169270
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G169270_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001337218.10.0SBP-transcription factor16
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A096SVS60.0A0A096SVS6_MAIZE; SBP-transcription factor16
STRINGGRMZM2G169270_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Representative plantOGRP71381115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14