PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G168229_P02
Common NameZEAMMB73_416940, Zm.34753
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 405aa    MW: 42518.2 Da    PI: 8.7377
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G168229_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.64.9e-40202277176
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                        +Cq+egC+adls ak+yhrrhkvCe+h+ka++v+++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk+
  GRMZM2G168229_P02 202 RCQAEGCKADLSAAKHYHRRHKVCEFHTKASAVAAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKP 277
                        6*************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-33195264IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.052200277IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-37201278IPR004333Transcription factor, SBP-box
PfamPF031102.9E-30203276IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MMMMNTSAAM SPPSTDVVVD DFSLGAMHQP YVVGFHADAG MRIMPSVVVD RPLLQQNTDL  60
LEEYDSFDFA ATGLLPLPFQ ELPGLLPPAN YLPLPTPSMA MSPPSLRLLT LPGVPVPTAA  120
ADVVYGGLGG GGAGGPSFLK REHGVGSGGG RIGGLNLGRR TYFTPAAVDR LLGGGLGGVG  180
LGMSVLGLGV GAAHHHQQQP PRCQAEGCKA DLSAAKHYHR RHKVCEFHTK ASAVAAAGKQ  240
QRFCQQCSRF HVLAEFDEAK RSCRKRLTEH NRRRRKPISA QGNNDHSSPP PPAPKKADTC  300
ITTSYNDDPK TGASNTAAAI SPNGGSGGGS CLDVLDNGQI TSSATAAAPT ALSLAAPPPP  360
LHHELHHEKD GSLDSVLMQR RVHYWSMAGG GTTTTKSIAV SSPRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-322032761184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259276KRSCRKRLTEHNRRRRKP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G168229
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G168229_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0360580.0BT036058.1 Zea mays full-length cDNA clone ZM_BFb0093L04 mRNA, complete cds.
GenBankEU9602680.0EU960268.1 Zea mays clone 223037 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132280.10.0SBP-domain protein2
SwissprotQ0E3F82e-52SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLB4FG200.0B4FG20_MAIZE; SBP-domain protein2
STRINGGRMZM2G168229_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-40squamosa promoter binding protein-like 8