PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G168229_P02 | ||||||||
Common Name | ZEAMMB73_416940, Zm.34753 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | SBP | ||||||||
Protein Properties | Length: 405aa MW: 42518.2 Da PI: 8.7377 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.6 | 4.9e-40 | 202 | 277 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cq+egC+adls ak+yhrrhkvCe+h+ka++v+++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk+ GRMZM2G168229_P02 202 RCQAEGCKADLSAAKHYHRRHKVCEFHTKASAVAAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKP 277 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-33 | 195 | 264 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.052 | 200 | 277 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-37 | 201 | 278 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.9E-30 | 203 | 276 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MMMMNTSAAM SPPSTDVVVD DFSLGAMHQP YVVGFHADAG MRIMPSVVVD RPLLQQNTDL 60 LEEYDSFDFA ATGLLPLPFQ ELPGLLPPAN YLPLPTPSMA MSPPSLRLLT LPGVPVPTAA 120 ADVVYGGLGG GGAGGPSFLK REHGVGSGGG RIGGLNLGRR TYFTPAAVDR LLGGGLGGVG 180 LGMSVLGLGV GAAHHHQQQP PRCQAEGCKA DLSAAKHYHR RHKVCEFHTK ASAVAAAGKQ 240 QRFCQQCSRF HVLAEFDEAK RSCRKRLTEH NRRRRKPISA QGNNDHSSPP PPAPKKADTC 300 ITTSYNDDPK TGASNTAAAI SPNGGSGGGS CLDVLDNGQI TSSATAAAPT ALSLAAPPPP 360 LHHELHHEKD GSLDSVLMQR RVHYWSMAGG GTTTTKSIAV SSPRW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-32 | 203 | 276 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 259 | 276 | KRSCRKRLTEHNRRRRKP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G168229 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G168229_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036058 | 0.0 | BT036058.1 Zea mays full-length cDNA clone ZM_BFb0093L04 mRNA, complete cds. | |||
GenBank | EU960268 | 0.0 | EU960268.1 Zea mays clone 223037 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132280.1 | 0.0 | SBP-domain protein2 | ||||
Swissprot | Q0E3F8 | 2e-52 | SPL5_ORYSJ; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | B4FG20 | 0.0 | B4FG20_MAIZE; SBP-domain protein2 | ||||
STRING | GRMZM2G168229_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 2e-40 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G168229_P02 |