PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G168002_P04

Common Name

ZEAMMB73_618510, Zm.99624

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

G2-like

Protein Properties

Length: 270aa MW: 28660.5 Da PI: 7.0859

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G168002_P04	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.3	2e-29	23	76	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWt +LH+rFv av+qLGG++kAtPk++l++m v+gLtl+h+k HLQkYRl GRMZM2G168002_P04 23 ARLRWTRQLHDRFVLAVAQLGGADKATPKSVLRAMAVPGLTLYHLKRHLQKYRL 76 7****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.9E-29	20	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.45E-14	22	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.4E-21	23	76	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-5	24	75	IPR001005	SANT/Myb domain
Pfam	PF14379	7.9E-14	129	163	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MASSLGVGGQ QQGHGHGHGE ARARLRWTRQ LHDRFVLAVA QLGGADKATP KSVLRAMAVP 60 GLTLYHLKRH LQKYRLVAVS RGVASPLGDS GDGTDERSSS SSENQPADEC DDGTVAEPHG 120 DSSRSVARMQ RKLQEQIEVQ RHLQLRIEAQ GRYLQSVLRR AQEVLADHGL GSAAGAEAEL 180 ASAVDTGSLS SSCCCSPTRR RSADSCVTSS SSEAESQAPV GGATWLHTCA GTRDCSVEQQ 240 PVQGEKSTFL QRHGAAEDGT SSEIDPNGNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-17	22	75	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	22	75	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	22	75	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	22	75	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.99624	0.0	meristem

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G168002

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G168002_P04

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT060918	0.0	BT060918.2 Zea mays full-length cDNA clone ZM_BFb0071B24 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020407237.1	0.0	uncharacterized LOC100382520 isoform X1
TrEMBL	K4JEC6	0.0	K4JEC6_MAIZE; G2-like transcription factor (Fragment)
STRING	GRMZM2G168002_P01	1e-135	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-42	G2-like family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G168002_P04