PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G167829_P01
Common NameLOC541743, Zm.24876
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 313aa    MW: 33358.8 Da    PI: 4.553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G167829_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.7e-141462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++eEd  l   v+++G+  +W + +++ g++R++k+c++rw++yl
  GRMZM2G167829_P01 14 RGPWSQEEDAVLRSFVQRFGNAgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                       89******************99*************************97 PP
2Myb_DNA-binding41.33.5e-1369111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +T eEd l++ +  + G++ W+ Ia++++ gRt++++k++w++
  GRMZM2G167829_P01  69 GGFTDEEDSLILSLYGEIGSK-WSVIASRLP-GRTDNDVKNYWNT 111
                        569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.971962IPR017930Myb domain
SuperFamilySSF466891.91E-2612109IPR009057Homeodomain-like
SMARTSM007171.6E-91364IPR001005SANT/Myb domain
PfamPF002495.0E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-221569IPR009057Homeodomain-like
CDDcd001672.06E-71662No hitNo description
PROSITE profilePS5129419.56763117IPR017930Myb domain
SMARTSM007175.3E-1267115IPR001005SANT/Myb domain
PfamPF002494.6E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2270116IPR009057Homeodomain-like
CDDcd001675.21E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRSPCCDKT KVKRGPWSQE EDAVLRSFVQ RFGNAGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPELRHGG FTDEEDSLIL SLYGEIGSKW SVIASRLPGR TDNDVKNYWN TKLKKRYLAS  120
STSTGEARPP PPPPAPPSAS GDDSSAAADS HQAQQDEPSL PLTPPAFSTD LDTTFAVVDD  180
DMLLFKSDQL YAELVGLVEK KSQATAGPST GGGGDEANST ATPSSSSYGT GTTNSPTVSS  240
SSGSCALWPT DVHGTTLLSE PTSSSLFDDA YGVGDDAFGA AALPAYSFQD LLASSYDDAT  300
AAVVTQELMQ YYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24141167107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.248760.0ovary
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO142433140.0
Expression AtlasGRMZM2G167829-
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G167829_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-124AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675095.10.0transcription factor MYB30 isoform X2
TrEMBLA0A1D6NDK80.0A0A1D6NDK8_MAIZE; R2R3MYB-domain protein
STRINGGRMZM2G167829_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-66myb domain protein 87
Publications ? help Back to Top
  1. Rabinowicz PD,Braun EL,Wolfe AD,Bowen B,Grotewold E
    Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants.
    Genetics, 1999. 153(1): p. 427-44
    [PMID:10471724]