PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G167088_P01
Common NameZEAMMB73_897865
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 401aa    MW: 44827.4 Da    PI: 6.144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G167088_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.5e-185198148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W+++Ed+ll+++v+ +G g W+++ r  g++R++k+c++rw ++l
  GRMZM2G167088_P01 51 KGPWSPDEDKLLKNYVEAHGEGKWNKVQRNSGLNRCGKSCRLRWTNHL 98
                       79*******************************************996 PP
2Myb_DNA-binding39.71.1e-12104147146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g++  eE +++++   ++G++ W++Ia++++ gRt++++k++w++
  GRMZM2G167088_P01 104 KGPFDNEEIDKILKFYLKWGPK-WAKIASRLP-GRTDNEIKNFWNT 147
                        7999****************99.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-2444101IPR009057Homeodomain-like
PROSITE profilePS5129424.64546102IPR017930Myb domain
SuperFamilySSF466895.24E-2848145IPR009057Homeodomain-like
SMARTSM007175.3E-1650100IPR001005SANT/Myb domain
PfamPF002491.1E-155198IPR001005SANT/Myb domain
CDDcd001675.70E-125398No hitNo description
Gene3DG3DSA:1.10.10.602.8E-21102151IPR009057Homeodomain-like
SMARTSM007176.9E-13103151IPR001005SANT/Myb domain
PROSITE profilePS5129415.736103153IPR017930Myb domain
PfamPF002491.0E-11104147IPR001005SANT/Myb domain
CDDcd001672.12E-9106147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MTVVEAGEVL NLKVGENPLL EGEAKTGYVS PDDQDGETAS EKPCGAPQLK KGPWSPDEDK  60
LLKNYVEAHG EGKWNKVQRN SGLNRCGKSC RLRWTNHLRP DLKKGPFDNE EIDKILKFYL  120
KWGPKWAKIA SRLPGRTDNE IKNFWNTRIK KTEKQGLPIY PEHVLSQVKQ PQQDMNCETP  180
GLSHGKKRIR EIEIHDLMDV KILFQHLDYH KDLVVPTKPL KRRASIGSLK ISGETKETYC  240
STDLNYVLAR SESVPTGSAI ASGYPVELPS IQSSSSTLSN DWLLQCVSAS VEQQIHSSIQ  300
STETISSQTT GLLHTMSEIS FETLIPMVYP MIHSFGYSEH ESSPNTDIQA ANLSLGSDDV  360
SQYYQVASFF DPGVPDTELG ASFFNDTPPE TSFLNQQKQV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-234715123126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1247510.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G167088
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G167088_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9728200.0EU972820.1 Zea mays clone 388684 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020399944.10.0transcription factor MYB29
RefseqXP_020399954.10.0transcription factor MYB29
TrEMBLK7VW090.0K7VW09_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G167088_P010.0(Zea mays)
STRINGGRMZM2G416652_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Representative plantOGRP1067739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.11e-50myb domain protein 101