PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G166946_P03 | ||||||||
Common Name | LOC100284941, TCP30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 283aa MW: 30475.1 Da PI: 9.343 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 93.7 | 3.7e-29 | 49 | 116 | 3 | 70 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ GRMZM2G166946_P03 49 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQ 116 78*************************************************************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.5E-27 | 50 | 111 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.951 | 50 | 108 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MIRGGNHQQA ADVEEELARN SRHAAAVATS RQWSAQTESR IVRVSRVFGG KDRHSKVKTV 60 KGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA ARHEIDKLPP LQFPPQDLMV 120 GHLTPHNMPL MVHDEKFGHL AAAAALASGG GGGAKVSQQG NVVDVDGTGA HHLVGRFPGG 180 YHRFMELNSA LGMVSGAMAP PYNNNYTGEA WNNSGGGVHD SGSPQIVAAA AHHSPFPSLL 240 SLAPRPHQLA FYSSEADQQF QVENLGSQSL SLSSARAYHD QAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.32451 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G166946 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G166946_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970217 | 0.0 | EU970217.1 Zea mays clone 342355 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151308.1 | 0.0 | uncharacterized protein LOC100284941 | ||||
Refseq | XP_008672990.1 | 0.0 | TCP family transcription factor containing protein isoform X1 | ||||
Refseq | XP_008672991.1 | 0.0 | TCP family transcription factor containing protein isoform X1 | ||||
TrEMBL | A0A3L6FKJ7 | 0.0 | A0A3L6FKJ7_MAIZE; Transcription factor TCP5 | ||||
TrEMBL | B6TZ02 | 0.0 | B6TZ02_MAIZE; TCP family transcription factor containing protein | ||||
STRING | GRMZM2G166946_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 3e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G166946_P03 |
Entrez Gene | 100284941 |
Publications ? help Back to Top | |||
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