PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G166721_P02
Common NameLOC100501911
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 436aa    MW: 48585.4 Da    PI: 7.9203
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G166721_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.51.1e-35431851128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                        lp+G++F+Ptd+el+ e+L++kv+++       +++  +i+++d    i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+     
  GRMZM2G166721_P02  43 LPAGVKFDPTDQELI-EHLEAKVKDEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtec 130
                        799************.99******999677544333..3444433445**********.555666799******************756666 PP

                NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  GRMZM2G166721_P02 131 dvhKGETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 185
                        64433778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3938204IPR003441NAC domain
PROSITE profilePS5100534.12643204IPR003441NAC domain
PfamPF023653.0E-1644185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MNRAHSSSSK LINEKLVEHR ISTAKHCPHC GEKIDSKPDW VGLPAGVKFD PTDQELIEHL  60
EAKVKDEGSR SHPLIDEFIP TIDGEDGICY THPEKLPGVT RDGLSKHFFH RPSKAYTTGT  120
RKRRKIQTEC DVHKGETRWH KTGKTRPVMV NGRQKGCKKI LVLYTNFGKH RKPEKTNWVM  180
HQYHLGDLEE EKEGELVVCK IFYQTQPRQC SWSSDRGAAA TALAATAAAA AAQEQHRRDS  240
GSGSCSSRDH EVSATSFPAG YTVTTAVEMQ QHMKQPADHF SFAPFRKTFD QEVGIGGDQV  300
PSNQLGRSEP HHAGLGQQPH GPVLATKTAV PATAFLISRP SNPVSTIVPP AMQHASVVLD  360
HDQFHVPAIL LHHHDKFQNM HQQPQQKLDR RSAGLEELIM GCTSSTSTKG DASIAHPQET  420
EWPYTYWPPD NQDHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-124118513140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.805410.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G166721
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G166721_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686010.0BT068601.1 Zea mays full-length cDNA clone ZM_BFb0363G10 mRNA, complete cds.
GenBankBT0865770.0BT086577.1 Zea mays full-length cDNA clone ZM_BFc0185G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152301.20.0ANAC075
RefseqNP_001183479.10.0ANAC075
SwissprotQ9M0F81e-144NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1D6MHR90.0A0A1D6MHR9_MAIZE; NAC domain containing protein 75
STRINGGRMZM2G166721_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-114NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]