PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G166687_P01 | ||||||||
Common Name | LOC100282571, TCP11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 240aa MW: 26112.4 Da PI: 4.9987 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.2 | 3e-34 | 75 | 170 | 3 | 77 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec. 73 ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl q+kpai+ l++ +s+s+ c GRMZM2G166687_P01 75 FRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLAQSKPAIDRLVDAadqaavvtgggptlvkgrgeGSNSS-TCc 165 689************************************************************6666666666666666665433333.333 PP TCP 74 .eaes 77 ++++ GRMZM2G166687_P01 166 lTDSR 170 32222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 33.366 | 76 | 134 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.5E-32 | 76 | 147 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MPSTAMSWDG YGAQIFLADM SFHHQDTLEA VFQQPAETTL LQAPAGEKEL PSNGSPPVVD 60 DAGVQAAAVL RKRPFRTDRH SKIRTAQGVR DRRMRLSVGV AREFFALQDR LGFDKASKTV 120 NWLLAQSKPA IDRLVDAADQ AAVVTGGGPT LVKGRGEGSN SSTCCLTDSR EELATEKGRS 180 RAGDAGLDWP PPLIEEHGCG ELGWIMSEAT ATPEQDGLEC YYQYCLQLEE LMRCNGGMPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-14 | 81 | 134 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-14 | 81 | 134 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.39804 | 0.0 | tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G166687 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G166687_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961498 | 0.0 | EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001148951.2 | 1e-179 | teosinte branched1 protein | ||||
TrEMBL | A0A060D6L2 | 1e-178 | A0A060D6L2_MAIZE; TCP transcription factor (Fragment) | ||||
STRING | GRMZM2G166687_P01 | 1e-178 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 3e-26 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G166687_P01 |