PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G166642_P02 | ||||||||
Common Name | ZEAMMB73_923404, Zm.21095 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 176aa MW: 18426.5 Da PI: 8.4974 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 7.9e-11 | 84 | 112 | 3 | 30 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 3 rahnerErrRRdriNsafeeLrellPk.a 30 ++h+e+ErrRR+riN +++Lr+++P + GRMZM2G166642_P02 84 KSHSEAERRRRERINAHLATLRTMVPCsD 112 58************************944 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.76E-8 | 79 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 8.804 | 81 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-8 | 84 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-9 | 85 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MDDIGSVPFA DAGLLDGFYG GSHGHGGDYG LLASQLGAGA GASSTSPAIL DGSVPLVDAA 60 ASAEEATRRK GDHLQDDKAA MALKSHSEAE RRRRERINAH LATLRTMVPC SDKAPTRWRR 120 GVGCTSAPGS GYRSTAGEDD AAWHCSKLGH RLSVETGPKP SRGKAQQYLA LARPNF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 89 | 94 | ERRRRE |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.21095 | 0.0 | glume |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G166642 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G166642_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT084448 | 0.0 | BT084448.2 Zea mays full-length cDNA clone ZM_BFb0115J18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457128.1 | 2e-32 | transcription factor bHLH30 | ||||
TrEMBL | A0A3L6FN23 | 3e-71 | A0A3L6FN23_MAIZE; Transcription factor bHLH30 | ||||
STRING | GRMZM2G016039_P01 | 3e-73 | (Zea mays) | ||||
STRING | GRMZM2G166642_P01 | 3e-73 | (Zea mays) |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G166642_P02 |