PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G165488_P04 | ||||||||
Common Name | LOC100193094 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YA | ||||||||
Protein Properties | Length: 202aa MW: 21340.3 Da PI: 9.9856 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 46.9 | 9.2e-15 | 167 | 201 | 1 | 36 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rk GRMZM2G165488_P04 167 DAPVYVNPKQYEGILRRRRARAKAESENRL-TKGRK 201 68****************************.99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51152 | 19.639 | 166 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.3E-11 | 169 | 201 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MMSFKGHEGF GQVSGAGMSQ ASHGAAPAGA PLPWWAGAQL LSGEPAPLSP EEAPRDTQFQ 60 VVPGASQGTP DPAPPKGGTP KVLKFSVFQG NLESGGKGEK TPKNSTAVVL QSPFAEYNGR 120 FEIGLGQSML VPSSYSCADQ CYGMLTTYGM RSMSGGRMLL PLIAPADAPV YVNPKQYEGI 180 LRRRRARAKA ESENRLTKGR KV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.28484 | 0.0 | meristem| pollen| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G165488 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G165488_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035257 | 0.0 | BT035257.1 Zea mays full-length cDNA clone ZM_BFb0051L17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001345563.1 | 1e-143 | uncharacterized protein LOC100193094 | ||||
Refseq | XP_008681101.1 | 1e-143 | uncharacterized LOC100193094 isoform X1 | ||||
Refseq | XP_008681103.1 | 1e-143 | uncharacterized LOC100193094 isoform X1 | ||||
Refseq | XP_008681104.1 | 1e-143 | uncharacterized LOC100193094 isoform X1 | ||||
TrEMBL | B4FDR9 | 1e-145 | B4FDR9_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G165488_P02 | 1e-143 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 2e-09 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G165488_P04 |
Entrez Gene | 100193094 |