PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G165488_P02
Common NameCA2P10, LOC100193094
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 341aa    MW: 35736.5 Da    PI: 9.6742
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G165488_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.72.9e-31167223158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rkpylheSRh hA+rR RgsgGrF
  GRMZM2G165488_P02 167 DAPVYVNPKQYEGILRRRRARAKAESENRL-TKGRKPYLHESRHLHAMRRVRGSGGRF 223
                        68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.6E-35165226IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.584166226IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-27169223IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-22169191IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-22200223IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMSFKGHEGF GQVSGAGMSQ ASHGAAPAGA PLPWWAGAQL LSGEPAPLSP EEAPRDTQFQ  60
VVPGASQGTP DPAPPKGGTP KVLKFSVFQG NLESGGKGEK TPKNSTAVVL QSPFAEYNGR  120
FEIGLGQSML VPSSYSCADQ CYGMLTTYGM RSMSGGRMLL PLIAPADAPV YVNPKQYEGI  180
LRRRRARAKA ESENRLTKGR KPYLHESRHL HAMRRVRGSG GRFLNTNKGG HGTDVAANGG  240
SKMAAAAAPS RLAMPPSAEP PWLSGLSDGS NPCCHSRSSV SSLSGSYVAS IYGGLEQHLR  300
APPFFTPLPP VMDGDHGGPT AATISSFKWA ASDGCCELLR A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A4e-18167228264HAPB protein
4g92_A4e-18167228264HAPB protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.284840.0meristem| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G165488
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G165488_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699330.0BT069933.1 Zea mays full-length cDNA clone ZM_BFb0328N11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345563.10.0uncharacterized protein LOC100193094
RefseqXP_008681101.10.0uncharacterized LOC100193094 isoform X1
RefseqXP_008681103.10.0uncharacterized LOC100193094 isoform X1
RefseqXP_008681104.10.0uncharacterized LOC100193094 isoform X1
TrEMBLA0A3L6EMT20.0A0A3L6EMT2_MAIZE; Nuclear transcription factor Y subunit A-10
TrEMBLC0PNR40.0C0PNR4_MAIZE; CCAAT-HAP2 transcription factor
STRINGGRMZM2G165488_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-25nuclear factor Y, subunit A10