PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G165355_P03 | ||||||||
Common Name | LOC100283296, ZEAMMB73_911935 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 212aa MW: 22821.1 Da PI: 4.5964 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.00019 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H GRMZM2G165355_P03 66 FTCNYCQRKFFSSQALGGHQNAH 88 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.99E-7 | 63 | 93 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 66 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MNDKEMMCQE QCDELSETEI SSQEASNSSG PVSLDLSLSV TDNSNGNNSN SGGAQADAAR 60 EPSRVFTCNY CQRKFFSSQA LGGHQNAHRR ERTLARRALR LDAAGPYYGY GYGYYADVAS 120 LPLYGSCLYP IGIQAHASAA ALPEHEDARA GADELRRPAR GLLSPMPFLV ADDEEMLFGW 180 PGSFRPDAAA PADSAGGVAV HAREEPDLTL RL |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.84379 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G165355 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G165355_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT063753 | 0.0 | BT063753.1 Zea mays full-length cDNA clone ZM_BFc0103M24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149670.1 | 1e-155 | zinc finger protein 7 | ||||
Refseq | NP_001152081.2 | 1e-155 | zinc finger protein 7 | ||||
Refseq | XP_020399258.1 | 1e-155 | zinc finger protein 7 isoform X1 | ||||
Refseq | XP_020399259.1 | 1e-155 | zinc finger protein 7 isoform X1 | ||||
Refseq | XP_020399260.1 | 1e-155 | zinc finger protein 7 isoform X1 | ||||
Swissprot | Q39263 | 3e-28 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | C0P634 | 1e-154 | C0P634_MAIZE; Zinc finger protein 1 | ||||
STRING | GRMZM2G165355_P01 | 1e-155 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66140.1 | 1e-14 | zinc finger protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G165355_P03 |
Entrez Gene | 100283296 |
Publications ? help Back to Top | |||
---|---|---|---|
|