PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G165272_P01
Common NameLOC103633075, Zm.86314
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 394aa    MW: 41468.1 Da    PI: 4.7781
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G165272_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35451362102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+l
  GRMZM2G165272_P01  45 FLTKTYQLVDDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKMVPDR---------WEFANDFFRRGEKRL 127
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  GRMZM2G165272_P01 128 LCDIHRRKV 136
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.8E-3836129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5841134IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.04E-3442134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-3245134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-204568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-2096108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAEQGGAAGE AAGSDPPAPA PATAPAPAPA LAADAAGQRS LPTPFLTKTY QLVDDPAVDD  60
VISWNEDGST FVVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKMVP DRWEFANDFF  120
RRGEKRLLCD IHRRKVAPAP AAGLATAAAA AASGAVTVAA APIPMALPVR PASPSLSTDE  180
HVLSSNSGSA EDHPQAAASG SVSASASGDT GEENERLRRE NARLTRELGQ MKKLCNNILL  240
LMTKYASSQQ LDASAALSSV VNCSGESSEA VPAPPPLPPA ILELMPACPG LATAAAGLVA  300
EADPDQASRL FGVSIGMKRM RDDDDTGEEQ ADHGAAADVK TEASDPQHRM EPSPESPDQH  360
PWPIYRPTPV YHSMRPCNGP DQGAGSDQDG SNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A3e-244513410110Heat shock factor protein 1
5hdn_A3e-244513410110Heat shock factor protein 1
5hdn_B3e-244513410110Heat shock factor protein 1
5hdn_C3e-244513410110Heat shock factor protein 1
5hdn_D3e-244513410110Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.863140.0endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G165272
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G165272_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0181990.0BT018199.1 Zea mays clone EL01N0559D07.c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652977.10.0heat stress transcription factor B-2c
SwissprotQ652B01e-149HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A1D6I9E70.0A0A1D6I9E7_MAIZE; Heat stress transcription factor B-2b
TrEMBLA0A3L6DV360.0A0A3L6DV36_MAIZE; Heat stress transcription factor B-2c
STRINGGRMZM2G165272_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-57HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]