PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G165272_P01 | ||||||||
Common Name | LOC103633075, Zm.86314 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HSF | ||||||||
Protein Properties | Length: 394aa MW: 41468.1 Da PI: 4.7781 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.2 | 1.8e-35 | 45 | 136 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+k+l GRMZM2G165272_P01 45 FLTKTYQLVDDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKMVPDR---------WEFANDFFRRGEKRL 127 9****************************************************************999.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++i+r+k GRMZM2G165272_P01 128 LCDIHRRKV 136 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.8E-38 | 36 | 129 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.9E-58 | 41 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.04E-34 | 42 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.8E-32 | 45 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-20 | 45 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-20 | 83 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 84 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-20 | 96 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MAEQGGAAGE AAGSDPPAPA PATAPAPAPA LAADAAGQRS LPTPFLTKTY QLVDDPAVDD 60 VISWNEDGST FVVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKMVP DRWEFANDFF 120 RRGEKRLLCD IHRRKVAPAP AAGLATAAAA AASGAVTVAA APIPMALPVR PASPSLSTDE 180 HVLSSNSGSA EDHPQAAASG SVSASASGDT GEENERLRRE NARLTRELGQ MKKLCNNILL 240 LMTKYASSQQ LDASAALSSV VNCSGESSEA VPAPPPLPPA ILELMPACPG LATAAAGLVA 300 EADPDQASRL FGVSIGMKRM RDDDDTGEEQ ADHGAAADVK TEASDPQHRM EPSPESPDQH 360 PWPIYRPTPV YHSMRPCNGP DQGAGSDQDG SNSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 3e-24 | 45 | 134 | 10 | 110 | Heat shock factor protein 1 |
5hdn_A | 3e-24 | 45 | 134 | 10 | 110 | Heat shock factor protein 1 |
5hdn_B | 3e-24 | 45 | 134 | 10 | 110 | Heat shock factor protein 1 |
5hdn_C | 3e-24 | 45 | 134 | 10 | 110 | Heat shock factor protein 1 |
5hdn_D | 3e-24 | 45 | 134 | 10 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.86314 | 0.0 | endosperm| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G165272 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G165272_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT018199 | 0.0 | BT018199.1 Zea mays clone EL01N0559D07.c mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008652977.1 | 0.0 | heat stress transcription factor B-2c | ||||
Swissprot | Q652B0 | 1e-149 | HFB2C_ORYSJ; Heat stress transcription factor B-2c | ||||
TrEMBL | A0A1D6I9E7 | 0.0 | A0A1D6I9E7_MAIZE; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A3L6DV36 | 0.0 | A0A3L6DV36_MAIZE; Heat stress transcription factor B-2c | ||||
STRING | GRMZM2G165272_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 1e-57 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G165272_P01 |
Entrez Gene | 103633075 |
Publications ? help Back to Top | |||
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