PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G165257_P01 | ||||||||
Common Name | LOC100280953, LOC103653703, ZEAMMB73_232196, ZEAMMB73_891324 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 31336.2 Da PI: 8.2992 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 39 | 89 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdp + r +lg+f+tae+Aa a++ a+++++g+ GRMZM2G165257_P01 39 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDIAARAMRGN 89 69*******.**********84....35999**********************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.84E-28 | 38 | 96 | No hit | No description |
Pfam | PF00847 | 3.0E-10 | 39 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-30 | 39 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-33 | 39 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.958 | 39 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-21 | 39 | 96 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.9E-9 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-9 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MEDVANAHIY AHAHRSKRPQ SAAIKDGDGD VDLSMKGARY RGVRRRPWGR FAAEIRDPMS 60 KERRWLGTFD TAEQAACAYD IAARAMRGNK ARTNFPGHAT AGYWPWGAPQ PAAVAHPINP 120 FLLHNLIMSS SNHGCRLLNH AGHGHVHSAA PRPPAPAADA TSTTIAAPFP VAAHPAVAMD 180 EDVDDWDGVL RSEPADAGLL QDALHDFYPF TRPRAGGGRR GLSAAGTDAR AAAALVAPVK 240 PDAFVVPSPF AGVEGDGEYP MMPQGLLEDV IHSPAFVEVV AAPPSVPTRR GRRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-19 | 36 | 102 | 2 | 69 | ATERF1 |
3gcc_A | 3e-19 | 36 | 102 | 2 | 69 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.122126 | 0.0 | tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G165257 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G165257_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954877 | 0.0 | EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008678756.1 | 0.0 | ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | B6SQ62 | 0.0 | B6SQ62_MAIZE; AP2 domain containing protein | ||||
STRING | GRMZM2G120401_P01 | 0.0 | (Zea mays) | ||||
STRING | GRMZM2G165257_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7263 | 30 | 50 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 3e-22 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G165257_P01 |
Entrez Gene | 103653703 |
Publications ? help Back to Top | |||
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