PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G165090_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 327aa    MW: 34687.9 Da    PI: 6.416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G165090_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.7e-16179226355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +ahn  E+rRR++iN+++ +L++++P +      K + a++L ++++Y+ksLq
  GRMZM2G165090_P01 179 EAHNLTEKRRRHKINERLKTLQQIVPGC-----SKSNQASTLDQTIHYMKSLQ 226
                        58*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-18173234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.259176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-13179226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-18179234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-15179230No hitNo description
SMARTSM003531.8E-15182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MNYPADAAAD PWCCYSNNAG EAAAAAAVPT SGETSSFFAD MVAADYSTDD LFELVLKQEG  60
HEGGASGPTQ PAVSCVWSSS SRFSKPPDVQ FDPPSEDEMA GWLYTIVKGD QRVCNDDDDG  120
RRPVANDDGA EDAVPVIGTS TVTTDKKEKV PSMTMTTTTD KEMRKTPGGG SSRRSHHGEA  180
HNLTEKRRRH KINERLKTLQ QIVPGCSKSN QASTLDQTIH YMKSLQHQVQ AMSSAGLLAP  240
AAAAYPAVVQ PRCVPMGTPP PVPSVPFQAA APTTTVLGGY HPPSSPAATM VPFGTTAVLQ  300
LPHYPGAAAA VMVPVAPLYP ARRRLLQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G165090
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G165090_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398223.10.0transcription factor PIF1
TrEMBLA0A1D6KFF61e-172A0A1D6KFF6_MAIZE; Transcription factor PIF4
STRINGGRMZM2G165090_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Representative plantOGRP10440410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.14e-17phytochrome interacting factor 3-like 5