PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G164909_P01 | ||||||||
Common Name | LOC100286024, Zm.123378 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HSF | ||||||||
Protein Properties | Length: 414aa MW: 44382.8 Da PI: 7.2774 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.2 | 3.5e-35 | 72 | 163 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+y++++d++++++isw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+k+l GRMZM2G164909_P01 72 FLTKTYQLVDDPAVDDVISWNDDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRL 154 9*****************************************************************99.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++i+r+k GRMZM2G164909_P01 155 LCDIHRRKV 163 ******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.3E-38 | 62 | 156 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.1E-59 | 68 | 161 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.62E-35 | 69 | 161 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.4E-31 | 72 | 161 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-20 | 72 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-20 | 110 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 111 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-20 | 123 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MLRDRKLPES TSTTFLSLSH SSCATVHPSP IRGAAMVAEQ ATTTVAVGEP PTATPQPAAA 60 AAAGQRSVPT PFLTKTYQLV DDPAVDDVIS WNDDGSAFIV WRPAEFARDL LPKYFKHNNF 120 SSFVRQLNTY GFRKIVPDRW EFANDCFRRG EKRLLCDIHR RKVTLPVAAA TRAVTVVATI 180 PMALPVDSPV YSGEEQVLSS SSSPEPPSLL QQQPTPSASG SGDMGEENER LRRENAWLAR 240 ELGQMKKLCN NILLLMSKYA ATKQPDAAKA AAAGNCSGGE SSGAAAAPPL PSILELLPSC 300 RRDPASAAVD AAAAAAGTEH EVDEKAGARL FGVSIGRKRM RDESSGHGGG GEDPVGRSAE 360 VKAEPVDARL DHQHSATEPQ SWPIYRPRPV YHPLRACSGL VSAGSDHDWS NNSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-27 | 57 | 164 | 15 | 131 | Heat shock factor protein 1 |
5d5v_B | 1e-27 | 57 | 164 | 15 | 131 | Heat shock factor protein 1 |
5d5v_D | 1e-27 | 57 | 164 | 15 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.123378 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G164909 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00432 | DAP | Transfer from AT4G11660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G164909_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975220 | 0.0 | EU975220.1 Zea mays clone 484753 heat shock factor protein 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152384.2 | 0.0 | heat shock factor protein 7 | ||||
Swissprot | Q6Z9C8 | 1e-140 | HFB2B_ORYSJ; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A1D6KL41 | 0.0 | A0A1D6KL41_MAIZE; Heat shock factor protein 7 | ||||
TrEMBL | A0A317YGR1 | 0.0 | A0A317YGR1_MAIZE; Heat stress transcription factor B-2b | ||||
STRING | GRMZM2G164909_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 8e-64 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G164909_P01 |
Entrez Gene | 100286024 |
Publications ? help Back to Top | |||
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