PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G164735_P01
Common Namecl11072_-2, ZEAMMB73_890056
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family BBR-BPC
Protein Properties Length: 348aa    MW: 38159.4 Da    PI: 10.0383
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G164735_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind326.86.2e-10033482301
          GAGA_bind   2 dddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.............rernlalsekkaavaerd..................maf 60 
                        dddgs   rn+g+y+     k  lglqlms ++ +rd+k+             +++ +   + +++ + rd                  m+f
  GRMZM2G164735_P01   3 DDDGSLGiRNWGFYDTV---KGSLGLQLMSPMPpDRDTKPllpragflqqhghHNAPH-QLHAQQPQHYRDsagggvsggtpaeqhpihMDF 90 
                        45677779******987...99**********99*********999998755322222.345566778888********************* PP

          GAGA_bind  61 lqrdkalaernkalverdnkllalllvensla.................salpvgvqvlsgtksi.dslqqlsepqledsavelreeeklea 134
                         +++++l+   ++ +++++k+l+  ++  +                   +++p+g++++s+++++ +++q + e+ql++++    +e++   
  GRMZM2G164735_P01  91 SRNEAWLHP-SHHQHPHEQKVLHSRPIGPAGHvghpghvahpvhavhvvHHHPTGYGMISDAQHTlQMMQPQLESQLQEPPPC--KEDE-AP 178
                        *********.899999********99988777788999**********99*********998765166666888999988776..2222.34 PP

          GAGA_bind 135 lpieeaaeeakekkkkkkr....qrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqC 222
                        +p++e ++++++ + +kkr    +++ +pk++k kk+kk s+++ +  + +++ +r++ +kk++++ +ng++lD +++P+PvCsCtGa++qC
  GRMZM2G164735_P01 179 PPLVEDHSVVSTGPPVKKRqrgqKQSCQPKSPKPKKPKK-SAVPPEGGTINGHATRRRGPKKNVGMMINGIELDLANIPTPVCSCTGAPQQC 269
                        444444444444433333300004556799999999999.77888999999988************************************** PP

          GAGA_bind 223 YkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                        Y+WG+GGWqSaCCtt+iS+yPLP++tkrrgaRiagrKmSqgafkk+LekLa+eGy+l np+DLk++WAkHGtnkfvtir
  GRMZM2G164735_P01 270 YRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLVNPIDLKTFWAKHGTNKFVTIR 348
                        ******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.1E-1801348IPR010409GAGA-binding transcriptional activator
PfamPF062179.0E-1153348IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0001052developmental stagevascular leaf expansion stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDDDDGSLGI RNWGFYDTVK GSLGLQLMSP MPPDRDTKPL LPRAGFLQQH GHHNAPHQLH  60
AQQPQHYRDS AGGGVSGGTP AEQHPIHMDF SRNEAWLHPS HHQHPHEQKV LHSRPIGPAG  120
HVGHPGHVAH PVHAVHVVHH HPTGYGMISD AQHTLQMMQP QLESQLQEPP PCKEDEAPPP  180
LVEDHSVVST GPPVKKRQRG QKQSCQPKSP KPKKPKKSAV PPEGGTINGH ATRRRGPKKN  240
VGMMINGIEL DLANIPTPVC SCTGAPQQCY RWGAGGWQSA CCTTSISTYP LPMNTKRRGA  300
RIAGRKMSQG AFKKVLEKLA GEGYNLVNPI DLKTFWAKHG TNKFVTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211217PKKPKKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.554480.0ear| meristem| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G164735
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G164735_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331970.0BT033197.1 Zea mays full-length cDNA clone ZM_BFb0064P02 mRNA, complete cds.
GenBankBT0645980.0BT064598.1 Zea mays full-length cDNA clone ZM_BFc0188M02 mRNA, complete cds.
GenBankEU9663700.0EU966370.1 Zea mays clone 293939 GAGA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130079.10.0uncharacterized protein LOC100191172
RefseqXP_008676421.10.0uncharacterized protein LOC100191172 isoform X1
SwissprotQ8GUC31e-137BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A3L6F5H30.0A0A3L6F5H3_MAIZE; Protein Barley B recombinant
TrEMBLB4F7V90.0B4F7V9_MAIZE; GAGA-binding protein
STRINGGRMZM2G164735_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-61basic pentacysteine 2
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]