PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G164341_P01
Common NameZEAMMB73_175141, Zm.34404
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 430aa    MW: 44526.6 Da    PI: 6.1823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G164341_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.3e-08329370955
                        HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         r+RR+ri +++  L++l+P  a      K++ a++L +A  Y++ Lq
  GRMZM2G164341_P01 329 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAASYLRFLQ 370
                        69******************966......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.811320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-14326379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.73E-12326374No hitNo description
Gene3DG3DSA:4.10.280.101.5E-11328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-5329370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDHNFSDMIS SESAWSGGVG AGDGAGSGMT VLERLVLDEA LAAAILELQG IQQAPACAGK  60
EVVMVAEPTA GGGVVGEAAV AFPSMGMATP TPAYADVDAD VLQRQQHHHR HHGAMGMPPD  120
YDLTPATPAV TVTAVPPAFT SAAAYSGGNF VVGQSPAVFS TSNETTATAA AVTSTTSLNC  180
EQGGGGGGGR RQRRANRKRK AAAERSPVAA AQESTLCSLL ASTTTAGEGG IQIAFSNAAA  240
AAKRSAKPSS LSSSGSSSIS FDGRNPETNC GGVDDPMYEP DTEALAQVKE MIYRAAAMRP  300
VSLGSEEDAG ERPRRRNVRI SSDPQTVAAR QRRERISERL RVLQKLVPGG AKMDTASMLD  360
EAASYLRFLQ SQVRELQTLD RRNYGLTTAD NNASRATATM AASGPLMSYN NGHGALPAFT  420
FPAAAGETLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329334RQRRER
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G164341
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G164341_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031411e-134AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032961e-134AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149571e-134AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-134CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656601.10.0transcription factor bHLH87
TrEMBLA0A3L6DRQ40.0A0A3L6DRQ4_MAIZE; Transcription factor bHLH87
TrEMBLK7V2Z40.0K7V2Z4_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G164341_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Representative plantOGRP1289345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-34bHLH family protein