PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163975_P01
Common NameLOC103649916, Zm.20556
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 443aa    MW: 47238.3 Da    PI: 8.2913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163975_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28.3e-053333711255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  GRMZM2G163975_P01 333 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 371
                        7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.398321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-11331383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-5331375No hitNo description
Gene3DG3DSA:4.10.280.107.4E-9335379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MMAASSSSSF NLSDHLVQDD LPWPASSSSS SQLPFAPSHP PHGAIIGGSQ QWWQQPQMLN  60
CADRHPSDEL EVLLSAQGSH HHHHHPSSSV IHPQLSSLLM MQDLGFQWSS CGSFVDTSSS  120
SPMPPPLVNG QQHDGHNKIK EWDRPLTANN SSRSSCASTA MACRDVVLDG GGGGGLPAMA  180
AVAADLDDGT VLPASVNVPR TTTTRQRPFP AAPPPLPGDA FEILASSRLC KTLLLSQASS  240
SVLLHNGTTM PLLRSEHVPY GPPAPAHPQG PSIGNYKQCM QMGASCGGRA QHEAACQSMA  300
AAAARPALPV VPSSKKPRVE QRSSTIVPSF KVRKEKLGDR IAALQQLVSP FGKTDTASVL  360
MEAIGYIKFL QDQVETLSRP YLKSSRSKKP RPTPRGSSNA SAGELEETRP DLRSRGLCLV  420
PLSCTSYVTN ENGVWVPPNF RAN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.205560.0meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163975
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163975_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9503520.0EU950352.1 Zea mays clone 489974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673819.10.0transcription factor bHLH110
TrEMBLA0A3L6FCS90.0A0A3L6FCS9_MAIZE; Transcription factor bHLH110
STRINGGRMZM2G163975_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-44bHLH family protein