PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163914_P02
Common NameLOC100383571, ZEAMMB73_992943
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 612aa    MW: 66805.7 Da    PI: 5.8317
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163914_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.42.1e-47111411128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp+GfrF+Ptdeelv +yLk+k++g+ +     i++vd+  +ePw+Lp k  +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatgkd+
  GRMZM2G163914_P02  11 LPVGFRFRPTDEELVLHYLKPKIAGRAHADLLLIPDVDLSACEPWELPaKaLIRSDDPEWFFFAPLDRKYPGGHRSNRSTAAGYWKATGKDR 102
                        79*************************888788***************5346667888********************************** PP

                NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + s+  g+l+g+kktLvf++grap+g++t W+mheyr 
  GRMZM2G163914_P02 103 LIRSRpAGTLIGVKKTLVFHRGRAPRGHRTAWIMHEYRT 141
                        ****989999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-539162IPR003441NAC domain
PROSITE profilePS5100554.70511162IPR003441NAC domain
PfamPF023658.5E-2612140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MQPPPQLPAA LPVGFRFRPT DEELVLHYLK PKIAGRAHAD LLLIPDVDLS ACEPWELPAK  60
ALIRSDDPEW FFFAPLDRKY PGGHRSNRST AAGYWKATGK DRLIRSRPAG TLIGVKKTLV  120
FHRGRAPRGH RTAWIMHEYR TAEPQLPQGQ NGSFVLYRLF NKNEEESEAS DAADSPSTSS  180
PPIAPEVKTE NLSQPTSAKM SPHIATVSSN EPTSNQQGDV NLLDVLTQLP DLHPEQAFDG  240
FPTITSPMRP YTDHPFFGNA GDQDLSAYID SIISHQDLEG LLASPSLADM VEQATVNVEP  300
HPINVPVLDN SSNSNRLAEN SRGKVGSETL LLIKGTDGTG AAACSSSATK ILQDNTDDHT  360
GAQSNLASSA SAQVSHFYNQ YELQSAFVPE MEPPNSGTLC SAASPTPHPQ HLFNGVVASD  420
VFNGIQGWPA EPLTDPHQGN APRRIRLAHS IQRASVTEPV LTSDVEDEDE PGICYSADSS  480
SASNTEDYAN VFSQTMAGET MRIQRGGVIS TQVVSSTEKL QDFTFDEGTL LHGELHHGGN  540
LRQRRTEETR QDVRDGMQHS VHVTRVAVPS LRRKGEAAQI GSVVRLLLLV LLLVVIFVFV  600
GLWKCSSFRL LH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-43516214168NAC domain-containing protein 19
3swm_B3e-43516214168NAC domain-containing protein 19
3swm_C3e-43516214168NAC domain-containing protein 19
3swm_D3e-43516214168NAC domain-containing protein 19
3swp_A3e-43516214168NAC domain-containing protein 19
3swp_B3e-43516214168NAC domain-containing protein 19
3swp_C3e-43516214168NAC domain-containing protein 19
3swp_D3e-43516214168NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.862210.0ear| endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163914
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163914_P02
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676350.0BT067635.1 Zea mays full-length cDNA clone ZM_BFc0101L24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169690.10.0uncharacterized protein LOC100383571
TrEMBLC0PH660.0C0PH66_MAIZE; Uncharacterized protein
STRINGGRMZM2G163914_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Representative plantOGRP1274945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.33e-61NAC transcription factor-like 9