PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G163843_P01 | ||||||||
Common Name | ZEAMMB73_584430, Zm.18934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 38206.1 Da PI: 5.6107 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76 | 9e-24 | 14 | 147 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgyWkatg 87 p f+ hP+d elv++yL++ ve+ + +i+++d+y ++P+ L + ++ +e+ wyf+++ ++k+ +g+rk+r at g W++ GRMZM2G163843_P01 14 PAFQSHPSDLELVNFYLRPWVETGVKTG-AFIHDADVYAADPNYLTRqfapaVAQDGERAWYFYTPLRHKSVHGTRKTRtvATGGGCWHNEA 104 67889*****************998666.78**************84467755566888********************7668899****** PP NAM 88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k ++v+ + +++ ++++ f +++ ++t W+m e rl GRMZM2G163843_P01 105 KARPVYMVsnGMHQIAHRQSFSFVEKDGGVRVRTGWLMMELRL 147 *****987667889**********9999999*********886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-29 | 12 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.425 | 12 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-13 | 14 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MARPPSAALK PPYPAFQSHP SDLELVNFYL RPWVETGVKT GAFIHDADVY AADPNYLTRQ 60 FAPAVAQDGE RAWYFYTPLR HKSVHGTRKT RTVATGGGCW HNEAKARPVY MVSNGMHQIA 120 HRQSFSFVEK DGGVRVRTGW LMMELRLVED GAAGQKPEED GALGSRVLCK VYRSPRNPEP 180 SGIEAATAPG QKAEADDDES CDDESSDATL DDDDSSNASL AAASGPKRES DEVESSDATV 240 AAPSRHSAPN DEISGGSAVA PGRKEKTEIG EVSTETSAAV RKRRKADGSS SPSTPVSTTD 300 MHCPQCGTHL MLTLNMAESK SEAGLAKDES ATAAPDQGGT GESSQKNVRV RFHQFL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G163843 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G163843_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087589 | 0.0 | BT087589.1 Zea mays full-length cDNA clone ZM_BFb0124L16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147684.2 | 0.0 | no apical meristem protein | ||||
TrEMBL | A0A3L6DTM8 | 0.0 | A0A3L6DTM8_MAIZE; Protein FEZ | ||||
TrEMBL | C4J9U2 | 0.0 | C4J9U2_MAIZE; NAC domain-containing protein 72 | ||||
TrEMBL | K0DCP8 | 0.0 | K0DCP8_MAIZE; NAC134 NAC type transcription factor (Fragment) | ||||
STRING | GRMZM2G163843_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 | Representative plant | OGRP12016 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 4e-18 | NAC domain containing protein 94 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G163843_P01 |