PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G163841_P01 | ||||||||
Common Name | LOC103637404, NAC72, ZEAMMB73_450567 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 34295.1 Da PI: 6.2706 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.6 | 1.8e-21 | 23 | 155 | 7 | 128 |
NAM 7 FhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgk 88 hP++ el++ +L+++v ++ +++++++++vd+y++ P +L ++++++ wyfF+ + k++ g+rk r t +g W++ GRMZM2G163841_P01 23 THPSEAELITSFLRPRVVVSDdsdTPCASFVHDVDVYSAGPGELTGrlapvLASNGDRAWYFFCAVRAKKSDGQRKARkvHTGEGCWHSEAG 114 69*************987666556777788**************84467765566899********************5447799***9999 PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+v++ ++ lvg ++ + f ++ + + +++ W+m e +l GRMZM2G163841_P01 115 AKPVVEGpGRLLVGHRQAFSFMTKVKGRRVRSGWLMVELSL 155 999999867778**********99999999******99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 31.263 | 17 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-12 | 21 | 154 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.18E-30 | 23 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MVATTRSKTR LGLGSRLQHN METHPSEAEL ITSFLRPRVV VSDDSDTPCA SFVHDVDVYS 60 AGPGELTGRL APVLASNGDR AWYFFCAVRA KKSDGQRKAR KVHTGEGCWH SEAGAKPVVE 120 GPGRLLVGHR QAFSFMTKVK GRRVRSGWLM VELSLDGADA DDVVLCKVYF SPRARASPAA 180 ASGRKERKAA ADDKNPASSA RRRRDPPADD AEAGTPTPDN DEDRDSAQSR GLADDDNSST 240 TVADDPDAVG LGTDDSAFSW WMRNRDRLME KYKIVDRPDE ELQKTLDLDE YLRLLSRDLD 300 PADALPRATS YM |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G163841 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G163841_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727003 | 0.0 | KJ727003.1 Zea mays clone pUT3979 NAC transcription factor (NAC72) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657827.1 | 0.0 | uncharacterized protein LOC103637404 | ||||
TrEMBL | K7V4H7 | 0.0 | K7V4H7_MAIZE; NAC transcription factor | ||||
STRING | GRMZM2G163841_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 | Representative plant | OGRP16018 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29035.1 | 5e-14 | NAC domain containing protein 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G163841_P01 |
Entrez Gene | 103637404 |