PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163841_P01
Common NameLOC103637404, NAC72, ZEAMMB73_450567
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 312aa    MW: 34295.1 Da    PI: 6.2706
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163841_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.61.8e-21231557128
                NAM   7 FhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgk 88 
                         hP++ el++ +L+++v  ++   +++++++++vd+y++ P +L        ++++++ wyfF+  + k++ g+rk r   t +g W++   
  GRMZM2G163841_P01  23 THPSEAELITSFLRPRVVVSDdsdTPCASFVHDVDVYSAGPGELTGrlapvLASNGDRAWYFFCAVRAKKSDGQRKARkvHTGEGCWHSEAG 114
                        69*************987666556777788**************84467765566899********************5447799***9999 PP

                NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k+v++  ++ lvg ++ + f ++ + + +++ W+m e +l
  GRMZM2G163841_P01 115 AKPVVEGpGRLLVGHRQAFSFMTKVKGRRVRSGWLMVELSL 155
                        999999867778**********99999999******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.26317171IPR003441NAC domain
PfamPF023652.0E-1221154IPR003441NAC domain
SuperFamilySSF1019414.18E-3023171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MVATTRSKTR LGLGSRLQHN METHPSEAEL ITSFLRPRVV VSDDSDTPCA SFVHDVDVYS  60
AGPGELTGRL APVLASNGDR AWYFFCAVRA KKSDGQRKAR KVHTGEGCWH SEAGAKPVVE  120
GPGRLLVGHR QAFSFMTKVK GRRVRSGWLM VELSLDGADA DDVVLCKVYF SPRARASPAA  180
ASGRKERKAA ADDKNPASSA RRRRDPPADD AEAGTPTPDN DEDRDSAQSR GLADDDNSST  240
TVADDPDAVG LGTDDSAFSW WMRNRDRLME KYKIVDRPDE ELQKTLDLDE YLRLLSRDLD  300
PADALPRATS YM
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163841
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163841_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270030.0KJ727003.1 Zea mays clone pUT3979 NAC transcription factor (NAC72) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657827.10.0uncharacterized protein LOC103637404
TrEMBLK7V4H70.0K7V4H7_MAIZE; NAC transcription factor
STRINGGRMZM2G163841_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Representative plantOGRP1601833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.15e-14NAC domain containing protein 3