PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163761_P01
Common NameZm.10313
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 263aa    MW: 28889 Da    PI: 5.0114
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163761_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.79.3e-091962282254
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        ++yp+  e+ +LA  +gL+ rq+++WF N R +
  GRMZM2G163761_P01 196 HPYPNDGEKLRLAVTTGLSRRQISNWFINARVR 228
                        89*****************************98 PP
2BELL56.38.1e-1952114971
               BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                        +akLl ll e++ r ++y  +l+ v+ssFe + g g+a+ Yt+l  +a+ rhF +L+ ai  +
  GRMZM2G163761_P01  52 QAKLLYLLSELESRRERYFGELERVVSSFEPALGGGAAAAYTTLMARAMGRHFGNLRRAILRR 114
                        58**********************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.7E-51113IPR006563POX domain
PfamPF075266.6E-192111IPR006563POX domain
CDDcd000861.45E-9172233No hitNo description
SMARTSM003891.2E-8172236IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.8E-25177238IPR009057Homeodomain-like
SuperFamilySSF466893.51E-17178240IPR009057Homeodomain-like
PfamPF059202.5E-17189228IPR008422Homeobox KN domain
PROSITE profilePS5007111.402191232IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MRPAQELLGE AVRVADLAAA DDEDEDQAAE RLEGGGHRAA RRAAGNDGDG VQAKLLYLLS  60
ELESRRERYF GELERVVSSF EPALGGGAAA AYTTLMARAM GRHFGNLRRA ILRRLRLQAA  120
AAARRSLRRG GEDQDDDDDD DGDGDGEVTE ELVDRLARRT KLAAAARAEQ AWRPLRGLPD  180
GSVAVLRAWL FDHFLHPYPN DGEKLRLAVT TGLSRRQISN WFINARVRLW KPMIEEMYKD  240
EFSDGSAVSS YDDASASGAS SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-16178236563Homeobox protein Meis2
4xrm_B2e-16178236563Homeobox protein Meis2
5bng_A2e-16178236159Homeobox protein Meis2
5bng_B2e-16178236159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.103130.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163761
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163761_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0823960.0AY082396.1 Zea mays knotted1-interacting protein (kip) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105184.20.0knotted interacting protein 1
SwissprotQ1PFD17e-58BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A1D6KYQ90.0A0A1D6KYQ9_MAIZE; Knotted1-interacting protein
STRINGGRMZM2G163761_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-34BEL1-like homeodomain 11