PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163641_P01
Common NameLOC103638651, ZEAMMB73_015897, Zm.22597
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 327aa    MW: 36338.1 Da    PI: 4.6289
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163641_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-09255305353
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                         R +++k qle+Le+++ +++ p+ ++   + + ++L+ + +  WF  rR 
  GRMZM2G163641_P01 255 ARKRLKKVQLETLERVYLRSKRPTNTMVSSIVQVTNLPRKTIVKWFEDRRE 305
                        58999********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.446250310IPR001356Homeobox domain
SMARTSM003893.2E-4252314IPR001356Homeobox domain
SuperFamilySSF466896.42E-10252307IPR009057Homeodomain-like
CDDcd000862.70E-8253304No hitNo description
PfamPF000465.1E-7255305IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.3E-9255305IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MATVLPLAAA SASATPRTCI SGGPVPARFL GTCMRLRIHI PPRGVACALR RRPTKYKTKI  60
QSEEDVVAAE DVMDDDDDED GALEALFKQL EEDLDNDDLS VDDNDISEED MARFEKELAE  120
AIEDVSGVDD SAGDSLLSSG DYGIDEQLDG SERAELKTWQ LRRLARALKI GRRKTSIKNL  180
AGELGLDRGL VIEMLRNPPP KLLLMSDSLP DEVPSKSEVK EIETPSTTTV DEVDTSEIKP  240
QLELPVHVMS AEWSARKRLK KVQLETLERV YLRSKRPTNT MVSSIVQVTN LPRKTIVKWF  300
EDRREQDGVP DHRAAFKRSL SEIGASS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254262ARKRLKKVQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163641
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163641_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9654150.0EU965415.1 Zea mays clone 285861 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659724.10.0protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
SwissprotQ8H0V55e-57OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLK7VEK40.0K7VEK4_MAIZE; Putative homeodomain-like transcription factor superfamily protein
STRINGGRMZM2G163641_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107003542
Representative plantOGRP69271618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.11e-58overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]