PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163427_P02
Common NameLOC103652667, ZEAMMB73_542861, Zm.22400
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 546aa    MW: 61873.8 Da    PI: 8.3771
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163427_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.11.2e-1051655371373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++ L++cA+ v++gd + a ++L+++++++sp+gd++qRla++f+ +L+arla+++s+ y++l +++ts   ++e l+a++l+  +s ++k
  GRMZM2G163427_P02 165 LRTMLIHCAQSVATGDRRSAAEVLKQIKHHSSPKGDATQRLAHCFAMGLEARLAGTGSQAYQSLMAQHTS---VVEFLKAYSLYMAASCFMK 253
                        5789************************************************************999999...******************* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        + ++  N +I +av+g +++Hi+ +++++G+Q+p L++ La R++gpp++R+T+++ p++g   ++++eetg+rL+++A+e+gvpf+f+  +
  GRMZM2G163427_P02 254 VRFIFSNMTICNAVAGRSKLHIVEYGVQHGFQYPGLFHLLARREGGPPEVRVTAIAVPQPGfrPAHQIEETGRRLSNIAREMGVPFKFRG-I 344
                        ************************************************************9*9***************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                        a ++e+++ ++L+++p+E+laVn+   + +l+desv ++s  +rd+vL+ +++++P+v+v++  +  ++++ Fl+rf eal ++sa fd+++
  GRMZM2G163427_P02 345 AAKWEAVRAKDLNIDPDEVLAVNSECYIGNLMDESVLVDSpsPRDTVLNNIREMRPNVFVHTVVNGTYGAPFFLTRFREALFFFSAQFDMID 436
                        99*********************************98877779************************************************* PP

               GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                        a++pr+++er  +Er ++g  + nv+acega+r+er et+++W+ r ++aG++++pl+ +++k  +  +++++ + + ++e++ +l+lgWk+
  GRMZM2G163427_P02 437 ATIPRDNNERLLIERDIFGTFALNVIACEGADRVERPETYKQWQVRNHRAGLRQLPLNPEVVKASRDKVKNYYHRDFLIDEDNRWLLLGWKG 528
                        *************************************************************************999**************** PP

               GRAS 365 rpLvsvSaW 373
                        r L+++S W
  GRMZM2G163427_P02 529 RVLYAMSTW 537
                        ********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.983139518IPR005202Transcription factor GRAS
PfamPF035144.1E-103165537IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MLNMAFLKGM EEAKKFLPTN NSLLIGLDET SCKSLPKDRY IKPYTAFAAT QVKEEEEHVV  60
VHGNGMPMFG GSRSTNGRVR KNHRAEGDDL EAETGRSSKL MMPEQEETGA NELYDEIMNC  120
TYEGFMKRME DLRIAMDSES EKSARKVSRK GARGRQQLVN EVVDLRTMLI HCAQSVATGD  180
RRSAAEVLKQ IKHHSSPKGD ATQRLAHCFA MGLEARLAGT GSQAYQSLMA QHTSVVEFLK  240
AYSLYMAASC FMKVRFIFSN MTICNAVAGR SKLHIVEYGV QHGFQYPGLF HLLARREGGP  300
PEVRVTAIAV PQPGFRPAHQ IEETGRRLSN IAREMGVPFK FRGIAAKWEA VRAKDLNIDP  360
DEVLAVNSEC YIGNLMDESV LVDSPSPRDT VLNNIREMRP NVFVHTVVNG TYGAPFFLTR  420
FREALFFFSA QFDMIDATIP RDNNERLLIE RDIFGTFALN VIACEGADRV ERPETYKQWQ  480
VRNHRAGLRQ LPLNPEVVKA SRDKVKNYYH RDFLIDEDNR WLLLGWKGRV LYAMSTWVAE  540
DNKPIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-401495383379Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163427
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163427_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677824.10.0scarecrow-like protein 34
TrEMBLK7U8D60.0K7U8D6_MAIZE; Uncharacterized protein
STRINGGRMZM2G163427_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-151GRAS family protein