PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163418_P01
Common NameLOC100281358, LOC103647375
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 331aa    MW: 34781.8 Da    PI: 6.5572
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163418_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY833e-26133193158
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                        ++Dg++WrKYGqKe+ g+++pr+YYrCt++   gCp++k+v+r++edp+v +++Y+g H++
  GRMZM2G163418_P01 133 VEDGHSWRKYGQKEILGAKHPRGYYRCTHRhsqGCPATKQVQRTDEDPTVYDVIYHGGHTC 193
                        58***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-27120193IPR003657WRKY domain
PROSITE profilePS5081121.379128191IPR003657WRKY domain
SuperFamilySSF1182902.75E-24131193IPR003657WRKY domain
SMARTSM007742.8E-37133195IPR003657WRKY domain
PfamPF031064.9E-26134193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020136anatomyear inflorescence
PO:0001052developmental stagevascular leaf expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007022developmental stageseed imbibition stage
PO:0007065developmental stageLP.05 five leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MASTEMEMGV VGGGVNSSGG GSCGGLVVTE LSHIKELVRQ LEVHLGGSPD LCKHLASQIF  60
SLTERSIGLI TSSNLDGARR QKRPAGDAGL ASPLSATPTS DVTDGPFQST KKKRKVMEQR  120
RQRVSSAGGE NPVEDGHSWR KYGQKEILGA KHPRGYYRCT HRHSQGCPAT KQVQRTDEDP  180
TVYDVIYHGG HTCVHRAAAG QAQATAPPEH RPDAHGHLRS LGAGLTVKTE TEEGLPAAAP  240
LCLSASTPPV SGGGCPCPCL APSTPENWGV SPASSNSNHA ASYLPFEDAE WRGHAGLQEV  300
VSASAPPPPA VDSLDDLLLL VDIDDIASLF D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22133193868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115KKKRKV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1587080.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163418
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163418_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9564340.0EU956434.1 Zea mays clone 1563280 WRKY74 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001351600.10.0WRKY74 - superfamily of TFs having WRKY and zinc finger domains
TrEMBLA0A1D6EP520.0A0A1D6EP52_MAIZE; WRKY74-superfamily of TFs having WRKY and zinc finger domains
STRINGGRMZM2G163418_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-29WRKY DNA-binding protein 46