PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163291_P02
Common NameSMH5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 286aa    MW: 31484.6 Da    PI: 9.2946
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163291_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.3e-11555146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       ++rWT eE+  l  +v+++G g+W+ I +          R+  ++k++w++
  GRMZM2G163291_P02  5 KQRWTSEEEAALRAGVARHGVGNWRMILNDPElsstlRYRSNVDLKDKWRN 55
                       79****************************9999*9999***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.494161IPR017930Myb domain
SuperFamilySSF466893.3E-15259IPR009057Homeodomain-like
SMARTSM007171.0E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-13556IPR009057Homeodomain-like
PfamPF002495.6E-7556IPR001005SANT/Myb domain
CDDcd116607.07E-20657No hitNo description
SuperFamilySSF467855.22E-17119193IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.4E-18119191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005268.8E-14120185IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.071122190IPR005818Linker histone H1/H5, domain H15
PfamPF005381.7E-10123183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000781Cellular Componentchromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALRAGV ARHGVGNWRM ILNDPELSST LRYRSNVDLK DKWRNMNVIV  60
TSSSTRDRGR TSTRRTRAAP KNNDQLLAMS TITSEVDDEI VDVKPIVSMS VEGWNTSNSK  120
KSHSRLDNII MEAIKNLNEP TGSHRTTIAN YIEEQYWPPS DFDHLLSAKL KYLATSGKLL  180
KVNRKYRIAP SLLEDVQREP LKLGSDASRT LTRSQVDAEL VRMATMTVEA AAAAAAHAVA  240
EAEAIMAEAE AAAREAEAAE AEARAAQAFA EAAVLTLKNR NAAKLV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.39400.0endosperm| meristem| ovary| pedicel| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163291
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163291_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2806300.0AY280630.1 Zea mays single myb histone 5 (Smh5) mRNA, complete cds.
GenBankBT0372970.0BT037297.1 Zea mays full-length cDNA clone ZM_BFb0161M01 mRNA, complete cds.
GenBankBT0862120.0BT086212.1 Zea mays full-length cDNA clone ZM_BFc0130J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105226.10.0single myb histone 5
RefseqXP_008673421.10.0single myb histone 5 isoform X1
SwissprotQ6WLH30.0SMH5_MAIZE; Single myb histone 5
TrEMBLA0A1R3P9Y30.0A0A1R3P9Y3_MAIZE; MYB-type transcription factor
TrEMBLK4JFF00.0K4JFF0_MAIZE; MYB-type transcription factor (Fragment)
STRINGGRMZM2G163291_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-59telomere repeat binding factor 1
Publications ? help Back to Top
  1. Marian CO, et al.
    The maize Single myb histone 1 gene, Smh1, belongs to a novel gene family and encodes a protein that binds telomere DNA repeats in vitro.
    Plant Physiol., 2003. 133(3): p. 1336-50
    [PMID:14576282]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]