PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G163291_P02 | ||||||||
Common Name | SMH5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 286aa MW: 31484.6 Da PI: 9.2946 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.7 | 8.3e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 ++rWT eE+ l +v+++G g+W+ I + R+ ++k++w++ GRMZM2G163291_P02 5 KQRWTSEEEAALRAGVARHGVGNWRMILNDPElsstlRYRSNVDLKDKWRN 55 79****************************9999*9999***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.494 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.3E-15 | 2 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-13 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.6E-7 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.07E-20 | 6 | 57 | No hit | No description |
SuperFamily | SSF46785 | 5.22E-17 | 119 | 193 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.4E-18 | 119 | 191 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 8.8E-14 | 120 | 185 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 24.071 | 122 | 190 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 1.7E-10 | 123 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0000781 | Cellular Component | chromosome, telomeric region | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043047 | Molecular Function | single-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGAPKQRWTS EEEAALRAGV ARHGVGNWRM ILNDPELSST LRYRSNVDLK DKWRNMNVIV 60 TSSSTRDRGR TSTRRTRAAP KNNDQLLAMS TITSEVDDEI VDVKPIVSMS VEGWNTSNSK 120 KSHSRLDNII MEAIKNLNEP TGSHRTTIAN YIEEQYWPPS DFDHLLSAKL KYLATSGKLL 180 KVNRKYRIAP SLLEDVQREP LKLGSDASRT LTRSQVDAEL VRMATMTVEA AAAAAAHAVA 240 EAEAIMAEAE AAAREAEAAE AEARAAQAFA EAAVLTLKNR NAAKLV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.3940 | 0.0 | endosperm| meristem| ovary| pedicel| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G163291 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G163291_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY280630 | 0.0 | AY280630.1 Zea mays single myb histone 5 (Smh5) mRNA, complete cds. | |||
GenBank | BT037297 | 0.0 | BT037297.1 Zea mays full-length cDNA clone ZM_BFb0161M01 mRNA, complete cds. | |||
GenBank | BT086212 | 0.0 | BT086212.1 Zea mays full-length cDNA clone ZM_BFc0130J16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105226.1 | 0.0 | single myb histone 5 | ||||
Refseq | XP_008673421.1 | 0.0 | single myb histone 5 isoform X1 | ||||
Swissprot | Q6WLH3 | 0.0 | SMH5_MAIZE; Single myb histone 5 | ||||
TrEMBL | A0A1R3P9Y3 | 0.0 | A0A1R3P9Y3_MAIZE; MYB-type transcription factor | ||||
TrEMBL | K4JFF0 | 0.0 | K4JFF0_MAIZE; MYB-type transcription factor (Fragment) | ||||
STRING | GRMZM2G163291_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1324 | 38 | 110 | Representative plant | OGRP855 | 16 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 1e-59 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G163291_P02 |
Entrez Gene | 542124 |
Publications ? help Back to Top | |||
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