PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163251_P01
Common NameLOC100280103
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 368aa    MW: 40721.9 Da    PI: 7.8768
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163251_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.72.9e-50411732128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLpk  +++++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++
  GRMZM2G163251_P01  41 LPGFRFHPTDEELVTFYLRRKVARKPLSM-EIIKEMDIYKHDPWDLPKasTAAGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRH 131
                        69***************************.99***************5345556889*********************************** PP

                NAM  92 vlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ +     ++  vglkk+Lv+y+g+a kg+ktdW+mhe+rl
  GRMZM2G163251_P01 132 IYPAtanpvESVSVGLKKSLVYYRGSAGKGTKTDWMMHEFRL 173
                        **98777777777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5440201IPR003441NAC domain
PROSITE profilePS5100553.64340201IPR003441NAC domain
PfamPF023659.0E-2542173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVVKEFGREV VMSMDKVKRG GEALMAAGAG AGDEEKDDAV LPGFRFHPTD EELVTFYLRR  60
KVARKPLSME IIKEMDIYKH DPWDLPKAST AAGGEKEWYF FCLRGRKYRN SIRPNRVTGS  120
GFWKATGIDR HIYPATANPV ESVSVGLKKS LVYYRGSAGK GTKTDWMMHE FRLPPAAASP  180
SPTPTSMQEA EVWTICRIFK RNIAYKRQPQ LPAWRQQQQS SSNTGSFESD GGGGGDEYMN  240
RCLPVPATAT ATAHQIGGML NGGGVVSATG SSSSSFFRDR ESVHGGQQFH FHEQWLSRFP  300
AAPAVEQKPQ LLDPSAMAIA FHQNDDQSVA TAAAAAASEC CKDGYYWDEI ARFMEVNDPT  360
VLHDCRYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-47282021166NO APICAL MERISTEM PROTEIN
1ut4_B2e-47282021166NO APICAL MERISTEM PROTEIN
1ut7_A2e-47282021166NO APICAL MERISTEM PROTEIN
1ut7_B2e-47282021166NO APICAL MERISTEM PROTEIN
4dul_A2e-47282021166NAC domain-containing protein 19
4dul_B2e-47282021166NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163251
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163251_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0555790.0BT055579.1 Zea mays full-length cDNA clone ZM_BFc0046N12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146513.10.0uncharacterized protein LOC100280103
SwissprotQ9SK552e-80NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLB8A1Y70.0B8A1Y7_MAIZE; Transcription factor JUNGBRUNNEN 1
STRINGGRMZM2G163251_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.18e-74NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]