PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G163233_P01
Common NameLOC100381970
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 607aa    MW: 68565.6 Da    PI: 6.4471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G163233_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-105297555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       + e+Er+RR ++N  +  Lr ++P+      +K+sK ++L  A++ Ik Lq
  GRMZM2G163233_P01 52 NLEAERKRRGKLNRNILALRAVVPNI-----TKMSKESTLSDAIDLIKRLQ 97
                       5689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-1547113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.1764796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.27E-1049100No hitNo description
Gene3DG3DSA:4.10.280.105.0E-1250107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-85197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1153102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF032243.7E-7232279No hitNo description
SuperFamilySSF483716.12E-97235597IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.102.0E-10235280IPR011989Armadillo-like helical
Gene3DG3DSA:1.25.10.102.0E-56305485IPR011989Armadillo-like helical
PfamPF032244.9E-46307477No hitNo description
PfamPF116982.1E-38483595IPR011987ATPase, V1 complex, subunit H, C-terminal
Gene3DG3DSA:1.25.40.1501.1E-38497596IPR011987ATPase, V1 complex, subunit H, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015991Biological ProcessATP hydrolysis coupled proton transport
GO:0000221Cellular Componentvacuolar proton-transporting V-type ATPase, V1 domain
GO:0000325Cellular Componentplant-type vacuole
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0009507Cellular Componentchloroplast
GO:0046961Molecular Functionproton-transporting ATPase activity, rotational mechanism
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MPRRRRTRSS EELKAEDFVD SVLNFGGEED GEEEKQEAGG DGQPAAEFKS KNLEAERKRR  60
GKLNRNILAL RAVVPNITKM SKESTLSDAI DLIKRLQNQV LELQRQLADP PGEAWEKQGS  120
ASCSESFTAT ENMPYQGQIE LVPLGPCKYH LRIFCKKAGV FTKVLEALCS YNAQVTSLNT  180
ITFYGYAESV FTIEVKGEQD VVMVELRSLL SNIVEGRHAD GAWTALVMDR AELTTEQVLK  240
RDIPWEHYMS TKLISGTCLQ LLRRYDHKPE SQRAPLLEEV LLYFDYSARP KLRNGTLPNG  300
DASNSKSKLT STHDVLRGLV NWLCSQLRNP THPSCSIPTS IHCLSTSLRE PYVRTLFVQA  360
DGIKLLIPLI SPAATQQSIQ LLYETCLCIW LLSFYDAAVD YLSTTRVMPR LVEVVKGSTK  420
EKVVRVAVLS FCNLLAKGAF AAQMIDLGLP QIVQNLKAQA WTDEDLLDAL NQLEVGLKEN  480
LKKLSSFDKY KQQVLLGHLD WSPMHKDPSF WRENINNFEE NDFQILRVLM TIIDTSSDTT  540
ALAVACYDLS QFLQYHPSGR IVVADLKAKD RVMKLMNHEN TEVQKNALLC VQRLFLGDLD  600
PENSWPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ho8_A3e-19351595214475VACUOLAR ATP SYNTHASE SUBUNIT H
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.39860.0aerial organ| embryo| endosperm| glume| leaf| meristem| ovary| pericarp| pollen| root| sheath| shoot| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G163233
Functional Description ? help Back to Top
Source Description
UniProtSubunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates the ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G163233_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666790.0BT066679.1 Zea mays full-length cDNA clone ZM_BFb0049L07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288363.10.0probable V-type proton ATPase subunit H
SwissprotQ84ZC00.0VATH_ORYSJ; Probable V-type proton ATPase subunit H
TrEMBLA0A1W0W6X50.0A0A1W0W6X5_SORBI; Uncharacterized protein (Fragment)
STRINGGRMZM2G163233_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP491455
Representative plantOGRP1398044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.17e-21bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]