PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G162739_P02 | ||||||||
Common Name | LOC100280247 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 186aa MW: 21044.1 Da PI: 10.8897 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.2 | 6.5e-53 | 22 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv +yL+++++g++ ++ ++i+evd+y+++PwdLp+++ +++ewyfF++rd+ky++g+r+nra+ sgyWkatg dk+v GRMZM2G162739_P02 22 LPPGFRFHPTDEELVAHYLCARAAGRRPPV-SIIAEVDLYRFDPWDLPERALFGRREWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPV 112 79*************************999.89***************87778999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g++vg+kk Lvfy+g+ p+g+kt+W+mheyrl GRMZM2G162739_P02 113 EH-GGRTVGVKKALVFYHGKPPRGVKTEWIMHEYRL 147 *9.9******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-60 | 18 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.705 | 22 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-27 | 23 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MVMAPAAAQQ QRRRDAEAEL NLPPGFRFHP TDEELVAHYL CARAAGRRPP VSIIAEVDLY 60 RFDPWDLPER ALFGRREWYF FTPRDRKYPN GSRPNRAAGS GYWKATGADK PVEHGGRTVG 120 VKKALVFYHG KPPRGVKTEW IMHEYRLADA GARARARKPG TGTLRVSGEH LAVSRRIFFL 180 GFISSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-83 | 10 | 147 | 3 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.76943 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G162739 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G162739_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066012 | 0.0 | BT066012.1 Zea mays full-length cDNA clone ZM_BFb0154N15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146648.1 | 1e-118 | uncharacterized protein LOC100280247 | ||||
Swissprot | Q7EZT1 | 9e-88 | NAC67_ORYSJ; NAC domain-containing protein 67 | ||||
TrEMBL | C0PCJ3 | 1e-133 | C0PCJ3_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G162739_P01 | 1e-118 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-66 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G162739_P02 |
Publications ? help Back to Top | |||
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