PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G162739_P01 | ||||||||
Common Name | LOC100280247, Zma054594 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 33893.1 Da PI: 5.9449 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.4 | 2.4e-52 | 22 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv +yL+++++g++ ++ ++i+evd+y+++PwdLp+++ +++ewyfF++rd+ky++g+r+nra+ sgyWkatg dk+v GRMZM2G162739_P01 22 LPPGFRFHPTDEELVAHYLCARAAGRRPPV-SIIAEVDLYRFDPWDLPERALFGRREWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPV 112 79*************************999.89***************87778999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g++vg+kk Lvfy+g+ p+g+kt+W+mheyrl GRMZM2G162739_P01 113 EH-GGRTVGVKKALVFYHGKPPRGVKTEWIMHEYRL 147 *9.9******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-63 | 18 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.783 | 22 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-27 | 23 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MVMAPAAAQQ QRRRDAEAEL NLPPGFRFHP TDEELVAHYL CARAAGRRPP VSIIAEVDLY 60 RFDPWDLPER ALFGRREWYF FTPRDRKYPN GSRPNRAAGS GYWKATGADK PVEHGGRTVG 120 VKKALVFYHG KPPRGVKTEW IMHEYRLADA GARARARKPG TGTLRLDDWV LCRLYNKKNE 180 WEKTQQQQEK KQNQKQMESE ASLSHSHSDT RTPESEIDDD PFPELASLPA LDDMMGPAAA 240 APAGAILPKE EVEDLGGLGG DDWLAGINLD DLQIPGEADF YGSMLVSPMA AKMEQDAAGF 300 PFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-96 | 10 | 183 | 3 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.76943 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G162739 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G162739_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055855 | 0.0 | BT055855.1 Zea mays full-length cDNA clone ZM_BFb0337K09 mRNA, complete cds. | |||
GenBank | KR010626 | 0.0 | KR010626.1 Zea mays NAC family protein (Zma054594) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146648.1 | 0.0 | uncharacterized protein LOC100280247 | ||||
Swissprot | Q7EZT1 | 1e-119 | NAC67_ORYSJ; NAC domain-containing protein 67 | ||||
TrEMBL | B8A2R3 | 0.0 | B8A2R3_MAIZE; NAC domain-containing protein 2 | ||||
STRING | GRMZM2G162739_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4414 | 30 | 71 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 1e-72 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G162739_P01 |
Entrez Gene | 100280247 |