PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G162709_P01
Common NameLOC100193925, MYB137
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 362aa    MW: 39598.2 Da    PI: 6.1289
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G162709_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-172774148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GRMZM2G162709_P01 27 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 74
                       89********************************************97 PP
2Myb_DNA-binding48.91.5e-1581123246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g+  +eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GRMZM2G162709_P01  81 GNLAPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 123
                        66669****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5112274IPR017930Myb domain
SuperFamilySSF466893.56E-3024121IPR009057Homeodomain-like
SMARTSM007171.2E-132676IPR001005SANT/Myb domain
PfamPF002496.2E-152774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-222881IPR009057Homeodomain-like
CDDcd001679.75E-112974No hitNo description
PROSITE profilePS5129424.99775129IPR017930Myb domain
SMARTSM007179.1E-1479127IPR001005SANT/Myb domain
PfamPF002492.0E-1481123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2382128IPR009057Homeodomain-like
CDDcd001672.26E-1185123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEGAMTTRSK HRRHEEDQEM TMVELRRGPW TLEEDNLLMN YIACHGEGRW NLLARCSGLK  60
RTGKSCRLRW LNYLKPDIKR GNLAPEEQLL ILELHSKWGN RWSRIAQHLP GRTDNEIKNY  120
WRTRVQKQAR QLRVDANSAV FRDAVRCYWM PRLLEKTMAA AAASTSGEVL LPPLPPPPQL  180
HPSRVAGLLA SSSSSPVQRD TSDSDYLPQR YHHHPVDPSP SASSTVSSSA ALAPVPCFSE  240
LSWVDQYGYG PYYSYGANLD DGAGVFDDSA ALEEGLGLDA LDLGPADDSD VAHSDATLLD  300
YLNSACAGGG TMMMAVTGGG GGVQSSGCGA TGGADADYRP SPCTWRTDEL GDPRQHQWGG  360
GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25241284107B-MYB
1gv2_A2e-25241281104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.209190.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G162709
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G162709_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634290.0BT063429.1 Zea mays full-length cDNA clone ZM_BFc0062O06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001334575.10.0uncharacterized protein LOC100193925
SwissprotQ9C9G73e-78MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A3L6FFG50.0A0A3L6FFG5_MAIZE; Transcription factor MYB62
STRINGGRMZM2G162709_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.19e-79myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]