PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G162481_P02
Common NameZEAMMB73_265683, Zm.12920
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WOX
Protein Properties Length: 419aa    MW: 44271.5 Da    PI: 8.7692
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G162481_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.14.2e-15119179257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  GRMZM2G162481_P02 119 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 179
                        89*****************99*************************************997 PP
2Wus_type_Homeobox106.32e-34118181265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
  GRMZM2G162481_P02 118 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 181
                        589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-14114187IPR009057Homeodomain-like
PROSITE profilePS5007111.256115180IPR001356Homeobox domain
SMARTSM003891.2E-6117184IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-8119186IPR009057Homeodomain-like
PfamPF000467.9E-13119179IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSVQVWLSPK RGASLPVFLK LSTSLSIEVE AQTLLPAHLP RSVCATRSCV HSRPHTNFHT  60
NQRFQSEPTL FCRSPPNQQA VDRSMEGSRN SPDRQSSGGS PEERGSGGSG GRGAGEPVRS  120
RWTPKPEQIL ILESIFNSGM VNPPKDETVR IRKLLERFGA VGDANVFYWF QNRRSRSRRR  180
QRQMQAAAAA AATAAAASSA ANSSPGASAT VGLPSGALQY PLVMSGSGTA CQYEQQASSS  240
SSSGSTGGSS LGLFALGAGV PSTGGGFFQE SCGASSPLAT GLMMGDVDRS GGSDDLFAIS  300
RQMGFAAASP VASASVAPPS TTAHHQQYYS CQSPTGTITV FINGVPMEVP SGPIDMRAIF  360
GQDVLLVHST GALLPVDDYG ILTQSLQTGE SYFLVISHID SLMYSLHSKL SWSYYASRY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G162481
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G162481_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0877860.0BT087786.1 Zea mays full-length cDNA clone ZM_BFb0202I23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020399406.10.0homeobox domain containing protein isoform X1
SwissprotQ10M291e-97WOX6_ORYSJ; WUSCHEL-related homeobox 6
TrEMBLC4JAD90.0C4JAD9_MAIZE; Putative homeobox DNA-binding domain superfamily protein
STRINGGRMZM2G162481_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Representative plantOGRP1277145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.23e-31WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]