PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G162405_P01
Common Namecl6898_1b
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 346aa    MW: 37116.3 Da    PI: 8.7495
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G162405_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57385.47.5e-27134228297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                        +fqr+wse+De+ +LqGl+ +   +g     d++ fy+ +++s+   +++ ql+eK+rrLK+Kf+ +++++++g +p+  ++hd+++++l++
  GRMZM2G162405_P01 134 KFQRIWSESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPQPYTRAQLSEKLRRLKNKFRSMSARVAEGLDPARLAPHDRDVLHLCS 224
                        79*******************.556878888************************************************************* PP

             DUF573  94 kiWg 97 
                        ++W+
  GRMZM2G162405_P01 225 RLWD 228
                        ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.6E-24135228IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSPPPPSGRA APCPTQPPRH FPPVPSRSRR TSPRREGGAR SLDPCAPASA MASDQQALSV  60
PVPVPVPSNP NPSALADPTP PSASAPRKLP IKRRSPRPSS SPPSSSPDSS DPLRAPAAGG  120
GGGGSDKQQQ PPFKFQRIWS ESDELRFLQG LLGCGAQGLV FPRDLNVFYD RFSESMPQPY  180
TRAQLSEKLR RLKNKFRSMS ARVAEGLDPA RLAPHDRDVL HLCSRLWDPA NAATSPFVAS  240
AGTSGNKRRR ANLQGTSLPP PDASGDSNSH DYNGINSSAP CLFPDGSNGE DMFYLEQEPG  300
HLGDHEGAAP VADSRFGVIV QEQGVIVHEQ GEAVGTLPKW EQWNWQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1180510.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G162405
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G162405_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352840.0BT035284.1 Zea mays full-length cDNA clone ZM_BFb0053D22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131744.10.0uncharacterized protein LOC100193110
TrEMBLB4FDU60.0B4FDU6_MAIZE; Uncharacterized protein
STRINGGRMZM2G162405_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-11DNA-binding storekeeper protein-related transcriptional regulator