PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G162382_P01
Common NameLOC100272246
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 285aa    MW: 30132.2 Da    PI: 6.6828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G162382_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08127171554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  GRMZM2G162382_P01 127 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 171
                        99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-15120181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-10120176No hitNo description
PROSITE profilePS5088815.77122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-14124182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-6127171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAGQPPPSGA SEDDFLEHFF AFPSAASAGA AGGHAGAGVG GDHPFPLALS LDAAAEAKPD  60
RDPVQLAGLF PPVFAGAGGV HQPHLRGPPP PQMFQAQPKP GEGGMAPQPP APRPKVRARR  120
GQATDPHSIA ERLRRERIAE RMRALQELVP NTNKTDRAAM LDEILDYVKF LRLQVKVLSM  180
SRLGGAGAVA QLVADIPLSV KGEAGDGGGA PQQQQQQHVW EKWSTDGTEK QVAKLMEEDI  240
GAAMQFLQSK ALCMMPVSLA MAIYDTQHPL DGHGHSLKPE PNASS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.248590.0meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G162382
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G162382_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0383410.0BT038341.1 Zea mays full-length cDNA clone ZM_BFb0227N15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140213.10.0uncharacterized protein LOC100272246
SwissprotO227681e-73UNE12_ARATH; Transcription factor UNE12
TrEMBLB4FMK30.0B4FMK3_MAIZE; BHLH transcription factor
STRINGGRMZM2G162382_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-54bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]