PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G161512_P04
Common Namecl6449_1b
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 402aa    MW: 43948.3 Da    PI: 8.6434
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G161512_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.2e-151663148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+ Ed+ll d v+++G g+W+++ r+  + R++k+c++rw ++l
  GRMZM2G161512_P04 16 KGPWTQAEDKLLRDHVRRHGEGNWNAVRRETRLQRCGKSCRLRWANHL 63
                       79******************************************9986 PP
2Myb_DNA-binding40.85.2e-1370112246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         ++++eE+ +++ ++ + G++ W++I++++  gRt++++k++w++
  GRMZM2G161512_P04  70 CPFSPEEERQILLLHGLIGNK-WARISKHLS-GRTDNEIKNYWNT 112
                        68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2871163IPR017930Myb domain
SuperFamilySSF466891.09E-2813110IPR009057Homeodomain-like
SMARTSM007172.2E-121565IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-201770IPR009057Homeodomain-like
CDDcd001672.96E-111863No hitNo description
PfamPF139211.4E-131979No hitNo description
PROSITE patternPS0017503140IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129422.93564118IPR017930Myb domain
SMARTSM007175.0E-1368116IPR001005SANT/Myb domain
CDDcd001675.71E-1071112No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2171117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009066anatomyanther
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MARSGGGMEG SGGLKKGPWT QAEDKLLRDH VRRHGEGNWN AVRRETRLQR CGKSCRLRWA  60
NHLRPNLRKC PFSPEEERQI LLLHGLIGNK WARISKHLSG RTDNEIKNYW NTRFKRRQRA  120
GLPPYPPDVE RQIKLLRAQN VNPFADADAD AAHANASAGL PAPPLLYDVG NPFALLSSIP  180
SLSQTASHSH SPLINQNYPL LNQMQVFHHL GGSQQPSFHQ DGSAAAFGDI VSSRLPPLPT  240
ARTQAELHSN QFDTSISGGL VDQSMLIGDE HLLRPNPSMV KVSSMPALSY REPDGSRMLP  300
AHGAGSDGDV SSLGQCPPGQ DLHRGATWDF TFAAVKPAKR RTASEVGFSD MFAVAPPGDW  360
FGGGSTAPSP GPSSAVTDEE FNLEMQQFMS MLPLSDEHGW NA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27141175107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.123700.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G161512
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G161512_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387230.0BT038723.1 Zea mays full-length cDNA clone ZM_BFb0313M23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008681371.10.0uncharacterized protein LOC100272446 isoform X1
TrEMBLA0A1D6GSP40.0A0A1D6GSP4_MAIZE; Myb domain protein 101
TrEMBLA0A3L6EMQ90.0A0A3L6EMQ9_MAIZE; Transcription factor GAMYB
STRINGGRMZM2G161512_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.11e-53myb domain protein 65