PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G161435_P01 | ||||||||
Common Name | LOC100273707 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 539aa MW: 56452.1 Da PI: 7.191 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.4 | 1.2e-08 | 454 | 492 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +Fe+ ++yp+ +e+ LA++ gLt +qV++WF N R + GRMZM2G161435_P01 454 MFENflHPYPKDHEKDVLAARSGLTRNQVSNWFINARVR 492 5776679******************************88 PP | |||||||
2 | BELL | 21.7 | 5.1e-08 | 313 | 385 | 6 | 72 |
BELL 6 qkkkakLlslleeVdkrYkqyveqlqtvissFeava......glgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 q+ ++ Ll+ l+ +d++Y+q+ +++q + F++ + g g + + +A +a+S +r L+ ++a+ i GRMZM2G161435_P01 313 QRVRSNLLKTLQLMDEKYNQCLDEIQSTTARFNTLMhsppggGGGGGGICAPFAHRAVSTMYRGLRRRLAGEI 385 566789*****************************9666665667889******************9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 0.0085 | 243 | 383 | IPR006563 | POX domain |
Pfam | PF07526 | 3.3E-20 | 248 | 381 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.353 | 433 | 496 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-6 | 436 | 500 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.51E-11 | 436 | 497 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-25 | 436 | 507 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.37E-15 | 437 | 505 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-15 | 453 | 492 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MASDPSTFSP IGVDAMGGGY FMAGSSSYGG GGIMSAEVPH FHHPGVLLDQ GGFGFGGLGN 60 AAVVGGAATA ADLGAHYAAN NIVLASFASQ LLANAPAPPR DDRAGGRTPP DEMDEELYGV 120 AGCDSRVAAS LRCPSQSGAM AVWSSPSSSK KPYGIWTSAG GPAHEPYHLA AAGLSDAGGL 180 RYPLAACSGG NASAAAASEL SLTLCSNSIA SSDSALNATE QCSSGASRSA LTELPRARSR 240 MALHFAAVVA RSRYAAVVQD LLNDVVGHML DGVADVTDDS CSGIGSVGAP SAVSSNRFMA 300 STEDAGARWG QAQRVRSNLL KTLQLMDEKY NQCLDEIQST TARFNTLMHS PPGGGGGGGG 360 ICAPFAHRAV STMYRGLRRR LAGEIMAAAS RASCWGESSS SVTVAAGGDV ERSWESAFIQ 420 KHWSAQQLRR TEQQCWRPQR GLPEKSVAVL KAWMFENFLH PYPKDHEKDV LAARSGLTRN 480 QVSNWFINAR VRLWKPMIEE MYQDLKRSSG AGGGGHGPAM EPQQHLSKRR ICELEDGGQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.86008 | 0.0 | meristem| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G161435 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G161435_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041674 | 0.0 | BT041674.1 Zea mays full-length cDNA clone ZM_BFb0029O24 mRNA, complete cds. | |||
GenBank | BT054959 | 0.0 | BT054959.1 Zea mays full-length cDNA clone ZM_BFc0113I21 mRNA, complete cds. | |||
GenBank | BT066391 | 0.0 | BT066391.1 Zea mays full-length cDNA clone ZM_BFc0036O04 mRNA, complete cds. | |||
GenBank | BT085703 | 0.0 | BT085703.1 Zea mays full-length cDNA clone ZM_BFc0049M04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141591.1 | 0.0 | uncharacterized protein LOC100273707 | ||||
Refseq | XP_008681469.1 | 0.0 | putative POX domain/homeobox DNA-binding domain family protein isoform X1 | ||||
Refseq | XP_008681470.1 | 0.0 | putative POX domain/homeobox DNA-binding domain family protein isoform X1 | ||||
TrEMBL | B4FX36 | 0.0 | B4FX36_MAIZE; Homeobox protein ATH1 | ||||
STRING | GRMZM2G161435_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3143 | 33 | 65 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 2e-54 | homeobox gene 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G161435_P01 |
Entrez Gene | 100273707 |