PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G161435_P01
Common NameLOC100273707
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 539aa    MW: 56452.1 Da    PI: 7.191
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G161435_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.41.2e-084544921854
                        HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +Fe+  ++yp+ +e+  LA++ gLt +qV++WF N R +
  GRMZM2G161435_P01 454 MFENflHPYPKDHEKDVLAARSGLTRNQVSNWFINARVR 492
                        5776679******************************88 PP
2BELL21.75.1e-08313385672
               BELL   6 qkkkakLlslleeVdkrYkqyveqlqtvissFeava......glgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        q+ ++ Ll+ l+ +d++Y+q+ +++q   + F++ +      g g   + + +A +a+S  +r L+ ++a+ i
  GRMZM2G161435_P01 313 QRVRSNLLKTLQLMDEKYNQCLDEIQSTTARFNTLMhsppggGGGGGGICAPFAHRAVSTMYRGLRRRLAGEI 385
                        566789*****************************9666665667889******************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0085243383IPR006563POX domain
PfamPF075263.3E-20248381IPR006563POX domain
PROSITE profilePS5007111.353433496IPR001356Homeobox domain
SMARTSM003891.5E-6436500IPR001356Homeobox domain
CDDcd000861.51E-11436497No hitNo description
Gene3DG3DSA:1.10.10.608.1E-25436507IPR009057Homeodomain-like
SuperFamilySSF466891.37E-15437505IPR009057Homeodomain-like
PfamPF059201.3E-15453492IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MASDPSTFSP IGVDAMGGGY FMAGSSSYGG GGIMSAEVPH FHHPGVLLDQ GGFGFGGLGN  60
AAVVGGAATA ADLGAHYAAN NIVLASFASQ LLANAPAPPR DDRAGGRTPP DEMDEELYGV  120
AGCDSRVAAS LRCPSQSGAM AVWSSPSSSK KPYGIWTSAG GPAHEPYHLA AAGLSDAGGL  180
RYPLAACSGG NASAAAASEL SLTLCSNSIA SSDSALNATE QCSSGASRSA LTELPRARSR  240
MALHFAAVVA RSRYAAVVQD LLNDVVGHML DGVADVTDDS CSGIGSVGAP SAVSSNRFMA  300
STEDAGARWG QAQRVRSNLL KTLQLMDEKY NQCLDEIQST TARFNTLMHS PPGGGGGGGG  360
ICAPFAHRAV STMYRGLRRR LAGEIMAAAS RASCWGESSS SVTVAAGGDV ERSWESAFIQ  420
KHWSAQQLRR TEQQCWRPQR GLPEKSVAVL KAWMFENFLH PYPKDHEKDV LAARSGLTRN  480
QVSNWFINAR VRLWKPMIEE MYQDLKRSSG AGGGGHGPAM EPQQHLSKRR ICELEDGGQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.860080.0meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G161435
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G161435_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0416740.0BT041674.1 Zea mays full-length cDNA clone ZM_BFb0029O24 mRNA, complete cds.
GenBankBT0549590.0BT054959.1 Zea mays full-length cDNA clone ZM_BFc0113I21 mRNA, complete cds.
GenBankBT0663910.0BT066391.1 Zea mays full-length cDNA clone ZM_BFc0036O04 mRNA, complete cds.
GenBankBT0857030.0BT085703.1 Zea mays full-length cDNA clone ZM_BFc0049M04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141591.10.0uncharacterized protein LOC100273707
RefseqXP_008681469.10.0putative POX domain/homeobox DNA-binding domain family protein isoform X1
RefseqXP_008681470.10.0putative POX domain/homeobox DNA-binding domain family protein isoform X1
TrEMBLB4FX360.0B4FX36_MAIZE; Homeobox protein ATH1
STRINGGRMZM2G161435_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-54homeobox gene 1